Computational Mass Spectrometry @ Pacific Northwest National Laboratory
- 86 followers
- Richland, WA
- https://omics.pnl.gov/software/
Popular repositories Loading
-
Thermo-Raw-File-Reader
Thermo-Raw-File-Reader Public.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
-
Informed-Proteomics
Informed-Proteomics PublicTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
-
DeconTools
DeconTools PublicUsed to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
-
DB-Schema-Export-Tool
DB-Schema-Export-Tool PublicExports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…
Repositories
- MS-File-Info-Scanner Public
Examines a series of MS data files (or data directories) and extracts the acquisition start and end times, number of spectra, and the total size of the data. In addition, it can create 2D-plot graphics of the m/z values vs. time for QA purposes.
PNNL-Comp-Mass-Spec/MS-File-Info-Scanner’s past year of commit activity - VSProj-NuGet-Version-Updater Public
Searches for Visual Studio project files (.csproj and.vsproj) that reference a specific NuGet package and updates the referenced version to a newer version if necessary.
PNNL-Comp-Mass-Spec/VSProj-NuGet-Version-Updater’s past year of commit activity - PRISM-Class-Library Public
The PRISM Class Library is a collection of routines used by many of the software tools that support the Data Management System at PNNL.
PNNL-Comp-Mass-Spec/PRISM-Class-Library’s past year of commit activity - MASIC Public
MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics including elution time of the peak apex, peak area, and peak signal/noise. It can also extract reporter ion abundances (e.g. iTRAQ or TMT).
PNNL-Comp-Mass-Spec/MASIC’s past year of commit activity