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agat_sp_filter_feature_by_attribute_value.pl should be able to filter by multiple values #426
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Could you provide an example of how you would like the command line to look like? |
I do not get what you mean by " I could only filter one gene at a time" |
Hello! I want to filter my GFF file according to multiple values of the attribute "gene_biotype", not just a single one. Alternatively, a feature for "reverse" filtering (so keeping only the desired attribute and discarding all others) would also be nice. Then one could (in my example) filter for gene_biotype = proteincoding and discard the rest. Only tangentially related, the Wiki https://agat.readthedocs.io/en/latest/tools/agat_sp_filter_feature_by_attribute_value.html still lists the command as "agat_sp_select_feature_by_attribute_value.pl" which caused me some confusion while trying to use it. |
Thank you for your feedback @fuesseler ! |
@Juke34 Awesome, looking forward to it :) |
Is your feature request related to a problem? Please describe.
I have a set of genes and I want to filter the gff accordingly. agat_sp_filter_feature_by_attribute_value.pl only handles single comparisons so I could only filter one gene at a time.
Describe the solution you'd like
value should accept multiple values.
Describe alternatives you've considered
I could filter one gene at a time and then reassemble the file but that's cumbersome.
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