file save triggers error #6453
Comments
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It's all the same underlying issue. Problem which makes it hard to debug, is that it's not occuring on Windows. But only on linux. |
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Ok, thanks alot. Hm, I have no significant experience in tracing processes, neither in programming. In case you would recommend questions/debugging tasks, I would happily try to serve with relevant data. |
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I have just prepared a fix version at #6455 It would be nice if you could test that when it's ready |
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@ilippert Would be nice if you could test this version: |
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the exception so far does not reoccur - in 10 minutes of testing. will report here if it does over the next days. |
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yeah, but got this now after saving and writing this line: Log File |
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still on Without me doing anything Log File |
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Okay thanks that is a bit different now, but maybe related. Will look into it the next days |
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Just to clarify, you have entry editor open, at which tab? |
Siedlerchr
added
bug
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I have the entry editor open at a custom tab "annote".
…On 09.05.20 22:12, Christoph wrote:
Just to clarify, you have entry editor open, at which tab?
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JabRef 5.1-PullRequest6455.368--2020-05-09--fff4926 I have now been working in the entry editor on a range of tabs and fields and the exception did not reappear. |
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Does the exception occur when you hit save (ctr+s) repeatedly? |
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I just tested a few times hitting ctrl+s, and also clicking on the buttons: so significant effect. |
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however, just before I read your question, I got this (I think similar to before) Log File |
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Thanks, okay, this is a different error now which is related to our Backup-Manager. For some reason the tmp file cannot be renamed (moved) to the bib file, because it's not/no longer existing.
Can you manually check if after hitting save, a bib.tmp file is created? The Autocomplete error, however seems to be fixed. |
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Yeah, thanks for the autcomplete error fix!!! on the |
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Okay, thanks. That no such file exception is probably a timing problem and might be related how unix handles files. |
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Hello,
The two problems are so impairing that basically I cannot write text longer than few words in JabRef fields, so I have to write it in another editor and then copy-paste. TEXT OF EXCEPTION WHEN TYPING IN FIELD "ABSTRACT" TEXT OF EXCEPTION WHEN TYPING IN FIELD ''COMMENT'' |
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for the jumping cursor, see #5904 - might that be it? |
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@gianlucabaldassarre For the one error on saving please try this version: |
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We merged the changes now in master |
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Thanks, the error causing the exception went away, but as a secondary
effect the "content selectors" are no more visible (but OK, this is better
than having the error).
The cursor jump is still there: I tried to follow the threads about it and
I understood it is a still an unsolved problem, right?
…On Mon, 11 May 2020 at 13:59, Christoph ***@***.***> wrote:
@gianlucabaldassarre <https://github.com/gianlucabaldassarre> For the one
error on saving please try this version:
https://builds.jabref.org/pull/6455/merge
The other cursor jumping is somehow related to the Autocomplete I think
and I could reproduce that in #5904
<#5904>
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.|.CS...|.......|...............|..|......US.|||.|||||.||.||||..|...|.......
Gianluca Baldassarre, Ph.D.,
Laboratory of Computational Embodied Neuroscience,
Istituto di Scienze e Tecnologie della Cognizione,
Consiglio Nazionale delle Ricerche (LOCEN-ISTC-CNR),
Via San Martino della Battaglia 44, I-00185 Roma, Italy
Senior Researcher at the Research Institute ISTC-CNR (www.istc.cnr.it)
Coordinator of Research Group LOCEN (https://www.istc.cnr.it/it/group/locen)
President of Advanced School in AI (www.as-ai.org)
President of Associazione culturale science2mind (www.science2mind.org)
Founder of ST&M4Humanity (www.stem4humanity.org <http://stem4humanity.org/>)
E-mail: gianluca.baldassarre@istc.cnr.it
Web: http://www.istc.cnr.it/people/gianluca-baldassarre
Tel: +39 06 44 595 231
Skype: gianluca.baldassarre
Motto: 'Learn from the past, live in(tensely) the present, dream for the
future'
Life mission statement: 'Serve humanity through core knowledge'
...CS.|||.||.|||.||..|.......|........|...US.|.|....||..|..|......|.........
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For some the comment fields cursor jumping seems to be fixed. If not I maybe have another idea. |
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My current system:
JabRef 5.1--2020-05-14--46777c2
Windows 10 10.0 amd64
Java 14.0.1
For some the comment fields cursor jumping seems to be fixed. If not I
maybe have another idea.
Yes, the cursor still jumps (e.g. when typing in the fields 'Abstract' and
'Comment', the latter being a custom field).
In particular it jumps:
- when I save with Ctrl+s or File-->Save (with the icon-save it jumps to
nowhere)
- once in a while for no apparent reason
Regarding content selectors, do you have some defined for multilne
fields? I disabled the autompletion only for the multiline fields
Yes, I was using the content selector for Comment (custom field) that is
multiline.
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...one temporary solution for users, to be able to edit the Comment field, and other more-than-one-line fields having the problem, is as follows:
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By the way, I recall the attention of the JabRef developers that this is a quite impairing problem of the software since it prevents users from manually changing the contents of more-than-a-line fields: this is a basic important functionality of the software! |
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Hi @gianlucabaldassarre , I took a look into the issue. I was able to partly recreate the problematic behaviour of jabref on my linux machine, although it does not happen every time I'm saving. I made an attempt to fix it, but I'm not quite sure, if it really works. Would you be so kind to test this build here ( https://github.com/JabRef/jabref/suites/720256702/artifacts/7152221 ) and to report, if this problem still persists on your machine? |
calixtus
added
the
status: waiting-for-feedback
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Hi, the link you sent (
https://github.com/JabRef/jabref/suites/720256702/artifacts/7152221) seems to
lead me to download a linux version of JabRef (after unzipping the file, I
got the files:
jabref_5.1-1_amd64.deb, jabref-5.1-1.x86_64.rpm,
JabRef-5.1-portable_linux.tar.gz),
while I am using now this system:
JabRef 5.1--2020-05-14--46777c2
Windows 10 10.0 amd64
Java 14.0.1
…On Wed, 27 May 2020 at 12:01, Carl Christian Snethlage < ***@***.***> wrote:
Hi @gianlucabaldassarre <https://github.com/gianlucabaldassarre> , I took
a look into the issue. I was able to partly recreate the problematic
behaviour of jabref on my linux machine, although it does not happen every
time I'm saving. I made an attempt to fix it, but I'm not quite sure, if it
really works. Would you be so kind to test this build here (
https://github.com/JabRef/jabref/suites/720256702/artifacts/7152221 ) and
to report, if this problem still persists on your machine?
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#6453 (comment)>, or
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--
.|.CS...|.......|...............|..|......US.|||.|||||.||.||||..|...|.......
Gianluca Baldassarre, Ph.D.,
Laboratory of Computational Embodied Neuroscience,
Istituto di Scienze e Tecnologie della Cognizione,
Consiglio Nazionale delle Ricerche (LOCEN-ISTC-CNR),
Via San Martino della Battaglia 44, I-00185 Roma, Italy
Senior Researcher at the Research Institute ISTC-CNR (www.istc.cnr.it)
Coordinator of Research Group LOCEN (https://www.istc.cnr.it/it/group/locen)
President of Advanced School in AI (www.as-ai.org)
President of Associazione culturale science2mind (www.science2mind.org)
Founder of ST&M4Humanity (www.stem4humanity.org <http://stem4humanity.org/>)
E-mail: gianluca.baldassarre@istc.cnr.it
Web: http://www.istc.cnr.it/people/gianluca-baldassarre
Tel: +39 06 44 595 231
Skype: gianluca.baldassarre
Motto: 'Learn from the past, live in(tensely) the present, dream for the
future'
Life mission statement: 'Serve humanity through core knowledge'
...CS.|||.||.|||.||..|.......|........|...US.|.|....||..|..|......|.........
|
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@gianlucabaldassarre https://github.com/JabRef/jabref/suites/720256702/artifacts/7152223 |
calixtus
removed
the
status: waiting-for-feedback
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I'm confused. I thought this is a linux specific issue. Does this affect windows too? |
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System: @Siedlerchr: the problem of the cursor jumping at the beginning of multi-line fields when saving is still there (with https://github.com/JabRef/jabref/suites/720256702/artifacts/7152223) @calixtus: I confirm, the problem is also in Windows 10 system (see system features above). |
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Refs koppor#390 |
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Options:
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The multiline comment issue just got merged. Please wait until the new development version is ready |
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JabRef 5.1--2020-05-08--d18ce55
Linux 5.6.8-200.fc31.x86_64 amd64
Java 14.0.1
When I edit text in the entry editor, I often get this exception, without further action. I suspected it might be related to autocompletion, but I read @Siedlerchr as this not being the case at #6351. As you see at #6351, I routinely faced this error for for 8 days now.
The bug issue heading might be equivalent to #6102? - but I am not sure whether it is the same issue.
How to reproduce: edit any text field and after a few seconds the exception shows up.
Log File
java.lang.IllegalStateException: Task must only be used from the FX Application Thread
at org.jabref.merged.module/javafx.concurrent.Task.checkThread(Unknown Source)
at org.jabref.merged.module/javafx.concurrent.Task.isRunning(Unknown Source)
at org.jabref.merged.module/org.controlsfx.control.textfield.AutoCompletionBinding.onUserInputChanged(Unknown Source)
at org.jabref.merged.module/org.controlsfx.control.textfield.AutoCompletionBinding.setUserInput(Unknown Source)
at org.jabref/org.jabref.gui.autocompleter.AutoCompletionTextInputBinding.setUserInputText(Unknown Source)
at org.jabref/org.jabref.gui.autocompleter.AutoCompletionTextInputBinding.lambda$new$0(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.markInvalid(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.controlContentHasChanged(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl.lambda$new$0(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$SingleInvalidation.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextArea$TextAreaContent.insert(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl.replaceText(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl.filterAndSet(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.doSet(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.set(Unknown Source)
at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.set(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.BidirectionalBinding$TypedGenericBidirectionalBinding.changed(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref/org.jabref.gui.util.BindingsHelper$BidirectionalBinding.updateLocked(Unknown Source)
at org.jabref/org.jabref.gui.util.BindingsHelper$BidirectionalBinding.changedB(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$SingleChange.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/javafx.beans.binding.ObjectBinding.invalidate(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.binding.BindingHelperObserver.invalidated(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.collections.MapListenerHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.collections.MapListenerHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.collections.ObservableMapWrapper.callObservers(Unknown Source)
at org.jabref.merged.module/com.sun.javafx.collections.ObservableMapWrapper.put(Unknown Source)
at org.jabref/org.jabref.model.entry.BibEntry.setField(Unknown Source)
at org.jabref/org.jabref.model.cleanup.FieldFormatterCleanup.cleanupSingleField(Unknown Source)
at org.jabref/org.jabref.model.cleanup.FieldFormatterCleanup.cleanupAllFields(Unknown Source)
at org.jabref/org.jabref.model.cleanup.FieldFormatterCleanup.cleanup(Unknown Source)
at org.jabref/org.jabref.logic.exporter.BibDatabaseWriter.applySaveActions(Unknown Source)
at org.jabref/org.jabref.logic.exporter.BibDatabaseWriter.savePartOfDatabase(Unknown Source)
at org.jabref/org.jabref.logic.exporter.BibDatabaseWriter.saveDatabase(Unknown Source)
at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.saveDatabase(Unknown Source)
at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source)
at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source)
at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source)
at org.jabref/org.jabref.gui.dialogs.AutosaveUiManager.listen(Unknown Source)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.Subscriber.invokeSubscriberMethod(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.Subscriber$SynchronizedSubscriber.invokeSubscriberMethod(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.Subscriber$1.run(Unknown Source)
at org.jabref.merged.module/com.google.common.util.concurrent.DirectExecutor.execute(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.Subscriber.dispatchEvent(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.Dispatcher$PerThreadQueuedDispatcher.dispatch(Unknown Source)
at org.jabref.merged.module/com.google.common.eventbus.EventBus.post(Unknown Source)
at org.jabref/org.jabref.logic.autosaveandbackup.AutosaveManager.lambda$listen$0(Unknown Source)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
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