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Fix R-CMD-Check failure
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GohtaAihara committed May 15, 2024
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8 changes: 6 additions & 2 deletions README.md
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`SEraster` is a rasterization preprocessing framework that aggregates cellular information into spatial pixels to reduce resource requirements for spatial omics data analysis. This is the `SEraster` R documentation website. Questions, suggestions, or problems should be submitted as [GitHub issues](https://github.com/JEFworks-Lab/SEraster/issues).

<p><img src="https://github.com/JEFworks/SEraster/blob/main/images/seraster_logo_hex.png?raw=true" align="center" height="300" style="float: center; height:300px;"/></p>
<p>

<img src="https://github.com/JEFworks/SEraster/blob/main/images/seraster_logo_hex.png?raw=true" align="center" height="300" style="float: center; height:300px;"/>

</p>

## Overview

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Our preprint describing `SEraster` is available on *bioRxiv*:

[Aihara G. et al. (2024), "SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis", *bioRxiv*](https://doi.org/10.1101/2024.02.01.578436)
[Aihara G. et al. (2024), "SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis", *bioRxiv*](https://doi.org/10.1101/2024.02.01.578436)
1 change: 0 additions & 1 deletion vignettes/formatting-SpatialExperiment-for-SEraster.Rmd
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library(SpatialExperiment)
library(Matrix)
library(ggplot2)
library(gridExtra)
```

## Load dataset
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12 changes: 6 additions & 6 deletions vignettes/install.Rmd
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remotes::install_github('JEFworks-Lab/SEraster')
```

We are currently submitting `SEraster` to Bioconductor.
We are currently submitting `SEraster` to Bioconductor (this section will be updated after `SEraster` is approved to Bioconductor).

To install `SEraster`, start R (version "4.3") and enter:
To install `SEraster`, start R (version "4.4") and enter:

```{r}
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SEraster")
# if (!require("BiocManager", quietly = TRUE))
# install.packages("BiocManager")
#
# BiocManager::install("SEraster")
```

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