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update vizGrids documentation
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rafaeldossantospeixoto committed Aug 21, 2024
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Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions R/visualization.R
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Expand Up @@ -222,10 +222,13 @@ vizEachCluster <- function(cells, coms, axisAdj = 1, s = 0.5, a = 1,
#' Visualize grids and clusters
#'
#' @description Uses the cells sf object and size of grid to visualize the grids
#' used to cheate the null background.
#' used to create the null background.
#'
#' @param cells sf object; spatial (x and y) coordinates and celltypes column
#' @param gridSize numeric; size of the grid to plot
#' @param scale numeric; size of the scale to plot
#' @param permutation numeric; the number of the permutation of interest.
#' @param totalPermutations numeric; the total number of permutations used to
#' shuffle the data.
#' @param square boolean; if true, create a squared grid, if false, make
#' hexagonal grid (default TRUE)
#' @param ofInterest character vector; a vector of specific clusters to visualize
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