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High CPU usage #440

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ellsclytn opened this issue Oct 25, 2023 · 115 comments
Closed

High CPU usage #440

ellsclytn opened this issue Oct 25, 2023 · 115 comments

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@ellsclytn
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I've noticed that my Ryot container enters a state of high CPU usage daily.

image

The above shows CPU usage over a 48h period. It seems to recover temporarily around 00:00, which leads me to believe it's something happening within one of the daily background jobs, but I'm just not sure which one as of yet.

The biggest spike seems to happen around 03:23-03:26.

image

I looked at the logs (where I've set RUST_LOG=ryot=trace,sea_orm=debug), but there doesn't seem to be much to look at beyond a lot of SQL queries.

2023-10-25T03:23:39.161607Z DEBUG sea_orm::driver::sqlx_postgres: SELECT "collection_to_entity"."id", "collection_to_entity"."last_updated_on", "collection_to_entity"."collection_id", "collection_to_entity"."metadata_id", "collection_to_entity"."person_id", "collection_to_entity"."metadata_group_id", "collection_to_entity"."exercise_id" FROM "collection_to_entity" WHERE "collection_to_entity"."collection_id" = 2 AND "collection_to_entity"."metadata_id" = 479 LIMIT 1
2023-10-25T03:23:39.161894Z DEBUG sea_orm::driver::sqlx_postgres: UPDATE "collection_to_entity" SET "last_updated_on" = '2023-10-25 03:23:39 +00:00' WHERE "collection_to_entity"."id" = 10 RETURNING "id", "last_updated_on", "collection_id", "metadata_id", "person_id", "metadata_group_id", "exercise_id"
2023-10-25T03:23:39.163085Z DEBUG sea_orm::driver::sqlx_postgres: SELECT "user_to_entity"."id", "user_to_entity"."last_updated_on", "user_to_entity"."user_id", "user_to_entity"."num_times_interacted", "user_to_entity"."metadata_id", "user_to_entity"."exercise_id", "user_to_entity"."metadata_monitored", "user_to_entity"."metadata_reminder", "user_to_entity"."exercise_extra_information" FROM "user_to_entity" WHERE "user_to_entity"."user_id" = 1 AND "user_to_entity"."metadata_id" = 479 LIMIT 1
2023-10-25T03:23:39.164215Z TRACE ryot::background: Job: "AfterMediaSeen", Time Taken: 28ms, Successful = true
2023-10-25T04:00:00.003823Z TRACE ryot::background: Getting data from yanked integrations for all users
2023-10-25T04:00:00.004961Z DEBUG sea_orm::driver::sqlx_postgres: SELECT "user"."id" FROM "user" WHERE "user"."yank_integrations" IS NOT NULL

This is the last few lines of logs between 2023-10-25T03:23:00 to 2023-10-25T04:26:00.

I'm wondering if anyone is/has experienced similar, or might have some further leads I could explore.

@IgnisDa
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IgnisDa commented Oct 25, 2023

How much memory is used?

@ellsclytn
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image

Not much at all. Highest point is 64.1 MB

@IgnisDa
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IgnisDa commented Oct 25, 2023

  • can you attach a screenshot of your summary
  • send me an export as described in the exporting documentation. You can find my email in my GH profile.
  • what are you system specs? Maybe run neofetch and show me the output

@ellsclytn
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Thanks for helping out, will send across an export soon.

Could you tell me what sort of summary you're after? I.e. just the same stuff as I opened the issue with, or some more things.

Neofetch:

OS: Ubuntu 22.04.3 LTS x86_64
Host: B550I AORUS PRO AX
Kernel: 5.15.0-86-generic
Uptime: 7 days, 6 hours, 4 mins
Packages: 1014 (dpkg)
Shell: bash 5.1.16
Terminal: /dev/pts/0
CPU: AMD Ryzen 5 5500 (12) @ 3.600GHz
GPU: NVIDIA GeForce GTX 1070
Memory: 13628MiB / 15830MiB

@IgnisDa
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IgnisDa commented Oct 25, 2023

what sort of summary you're after

Just the one on your Ryot dashboard

Also what is your architecture? I remember someone reporting high cpu usage on arm64.

@ellsclytn
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ellsclytn commented Oct 25, 2023

Oh, that dashboard. Of course 😀

image

I'm on amd64. I'll also mention I'm on v3.0.0 of Ryot, though this has been happening for me since at least v2.24.0 (possibly earlier, unfortunately I didn't keep track that far back).

@IgnisDa
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IgnisDa commented Oct 25, 2023

Try updating Ryot to latest and see it it improves (i doubt it).

What do you use to monitor your server? I don't have any monitoring on my server so I don't know what an ideal cpu footprint should look like.

@ellsclytn
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ellsclytn commented Oct 25, 2023

Will do. I'll give it a day at least after updating before making any judgement calls on it. Just emailed you the export, too.

I'm using Grafana with Cadvisor and Prometheus. And then this dashboard template, along with pretty similar config to what they have in the readme (might have tweaked it a little bit for my setup).

@IgnisDa
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IgnisDa commented Oct 25, 2023

Can you tell me the versions of the prometheus, node-exporter, cadvisor, grafana? I suspect the dashboard template is outdated. It uses latest tags.

@ellsclytn
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Grafana: grafana-oss:9.1.1
Cadvisor: 0.47.2
node-exporter: 1.6.1
Prometheus: 2.47.2

I've also put my version of the dashboard (admittedly I've deleted some of the panels I never used) into a gist.

@IgnisDa
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IgnisDa commented Oct 25, 2023

Thanks!

@ellsclytn
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Unfortunately the behavior hasn't changed since updating. I might be a bit slow to get back to this, but I'm thinking of spinning up a separate Ryot instance, importing specific sections at a time (e.g. movies, shows, books) and observing the results to see if I can narrow down further.

@thespad
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thespad commented Oct 28, 2023

I'm seeing the same issue with high CPU on v3.2.5. Last 2 days:
image

Similarly low memory usage:
image

image

Also seeing big CPU spikes on the DB every night for 2 hours
image

I'm assuming some kind of scheduled tasks running, but 2 hours is a long time to be spiking like that.

@IgnisDa
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IgnisDa commented Oct 29, 2023

Can you set env variable RUST_LOG=ryot=trace and then go to miscellaneous settings and recalculate summary. A log should appear telling you how much time the calculation step took. Does it take 2 hours?

@ellsclytn
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Mine was super quick! 23 seconds.

2023-10-29T03:00:36.036545Z TRACE ryot::background: Started job: "RecalculateUserSummary"
2023-10-29T03:00:59.599454Z TRACE ryot::background: Job: "RecalculateUserSummary", Time Taken: 23562ms, Successful = true

@IgnisDa
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IgnisDa commented Oct 29, 2023

Then it is not the summary calculation that takes up CPU. I recommend you wait for another day and observe the logs around the time when the CPU spike happens and see which job is causing them.

You can also change the timezone (via TZ env var) if you want the job to happen sooner.

@IgnisDa
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IgnisDa commented Oct 29, 2023

Another possible cause: do you have a lot of media in the watchlist and in progress collections? Also do you have a lot of explicitly monitored stuff (there's a filter for it in the list page)?

@ellsclytn
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image

Not a huge number there. Similarly for Explicitly Monitored, where the only thing that came up was 7 TV Shows.

I've also imported my export into a separate, v2.0.0 instance of Ryot, just to see if it behaves the same. I'll keep an eye on it and slowly bump the version on that second instance until I start seeing the behavior.

@IgnisDa
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IgnisDa commented Oct 29, 2023

Cool thanks!

@IgnisDa
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IgnisDa commented Oct 29, 2023

I am also fairly certain this usage spike is localized to your instance. Here are the metric of the public demo instance (which has a lot more media than yours):

image

So there must be something different about your setup that's causing the spikes.

@IgnisDa
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IgnisDa commented Oct 29, 2023

Can you also attach usages of the database container? Maybe something is blocking there.

@ellsclytn
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I currently share the Postgres instance with a number of other services. I'll spin up a dedicated postgres instance so I can observe it more accurately. I'll post some screenshots in a day or two when there's a good amount of data there.

@thespad
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thespad commented Oct 29, 2023

OK so here is a week's worth of data, as you can see the CPU spikes happen every day at 7am (6am today because the clocks went back last night). I've included the DB container too (it's only running the ryot db). Not sure why Friday and today are higher spikes than the other days.

image

@IgnisDa
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IgnisDa commented Oct 29, 2023

@thespad your usage pattern seems fine to me. Those are just the daily cron jobs running.

@thespad
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thespad commented Oct 29, 2023

Running for 3-18 hours every day? That seems excessive.

@IgnisDa
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IgnisDa commented Oct 29, 2023

I suggest you do this (#440 (comment)) too and report back the times.

@thespad
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thespad commented Oct 29, 2023

This is now with v3.3.2

ryot  | 2023-10-29T13:20:50.030129Z TRACE ryot::background: Started job: "RecalculateUserSummary"
ryot  | 2023-10-29T13:21:15.916227Z TRACE ryot::background: Job: "RecalculateUserSummary", Time Taken: 25886ms, Successful = true
ryot  | 2023-10-29T13:21:46.044682Z TRACE ryot::background: Started job: "RecalculateCalendarEvents"
ryot  | 2023-10-29T13:22:15.154754Z DEBUG recalculate_calendar_events: ryot::miscellaneous::resolver: Finished deleting invalid calendar events
ryot  | 2023-10-29T13:22:15.156104Z DEBUG recalculate_calendar_events: ryot::miscellaneous::resolver: Finished updating calendar events
ryot  | 2023-10-29T13:22:15.156146Z TRACE ryot::background: Job: "RecalculateCalendarEvents", Time Taken: 29111ms, Successful = true
ryot  | 2023-10-29T13:22:38.020362Z TRACE ryot::background: Started job: "UpdateMetadata"
...
ryot  | 2023-10-29T13:24:38.428239Z TRACE ryot::miscellaneous::resolver: Updating metadata for 331
ryot  | 2023-10-29T13:24:38.533986Z TRACE ryot::background: Started job: "AssociatePersonWithMetadata"
...

This is still going after 10 minutes, I'll let you know when it finally completes

@thespad
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thespad commented Oct 29, 2023

Though I'll note that:
image

CPU usage (obviously) dropped to almost zero when I recreated the container to update the logging envs, and has not returned to the previous levels while running any of these jobs, which suggests that however long they take they are not (on their own) responsible for the high CPU usage.

@thespad
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thespad commented Oct 29, 2023

The AssociatePersonWithMetadata job is still running after 1.5 hours but still basically no CPU activity

image

@IgnisDa
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IgnisDa commented Oct 29, 2023

The AssociatePersonWithMetadata job is still running after 1.5 hours but still basically no CPU activity

Pretty sure it's not running since it is just one HTTP and DB call. Logging must have been lost due to an error. I haven't really done good error reporting in the code.

It would be great if you could associate the CPU spike to a specific job/event. Next time you observe a spike, just have a look at the time on the graph and then the corresponding logs of the Ryot container.

@thespad
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thespad commented Jan 7, 2024

Unfortunately the standard Linux DNS resolvers are bad and dumb and don't cache requests, so if you make 500 calls to a site, you're also making 500 DNS requests and it soon adds up. My workaround in the past has been a cron job to fetch the DNS records and add them to the container hosts file so that it doesn't have to do a lookup every time. Something like:

#! /bin/bash

cp /etc/hosts /tmp/hosts.new && sed -i '/api.themoviedb.org/d' /tmp/hosts.new && /usr/bin/dig +short api.themoviedb.org | while read line; do $(echo "$line api.themoviedb.org") >> /tmp/hosts.new; done

echo "Last Updated $(date +'%Y-%m-%d %T')" > /config/dnsupdate.log

@IgnisDa
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IgnisDa commented Jan 7, 2024

Hmm this looks interesting @thespad. Do you think I should include this in the docker image?

@thespad
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thespad commented Jan 7, 2024

It's tricky because it's the kind of things people have Very Strong Opinions about, but personally my view is that if you know you're going to be making a ton of connections to a given domain it's probably wise to try and reduce the network load it generates.

The TTL on the api.themoviedb.org record is the (IMO) very silly AWS default of 60 seconds, but in practice you could probably run the cron job every ~15 minutes and you'd probably be safe. Even if you ran it every minute you'd still only generate 1440 DNS queries a day instead of potentially millions.

@ellsclytn
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image

Looks like the recent releases have improved the resource usage quite a bit, nice work! It still sits around 14% CPU once midnight passes, but that's absolutely a huge improvement.

@IgnisDa
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IgnisDa commented Jan 30, 2024

Yep I'm pretty sure which query is hogging the remaining cpu. I should get around to it by mid Feb.

@IgnisDa
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IgnisDa commented Feb 3, 2024

@ellsclytn Could you upgrade to the latest version and see if this has been fixed?

@ellsclytn
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ellsclytn commented Feb 6, 2024

image

Doesn't look to have made a huge impact unfortunately. I also noticed I seem to be unable to regenerate summaries - it makes me wonder if the application is getting stuck in a loop somewhere.

@IgnisDa
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IgnisDa commented Feb 6, 2024

Try setting env var RUST_LOG=ryot=debug and try to regenerate summary.

@ellsclytn
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I realised I've been running an older version of Postgres. I've upgraded to Postgres 16. I have debug logs enabled on Ryot now, but manually kicking off a summary regeneration completed within seconds. I'll keep an eye on it tomorrow after the regular cron jobs start and report the results.

@IgnisDa IgnisDa mentioned this issue Feb 12, 2024
@ellsclytn
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Unfortunately it has continued even after the Postgres upgrade. Once the midnight jobs started CPU returned to ~10% and stayed there. Then when the next midnight rolled around it roughly doubled CPU usage.

I'd post the logs except that they're quite big. 120MB for the debug logs in total. ~500KB if I exclude any lines mentioning "Progress update". I'll wait for #640 to release and try a few things with it.

@IgnisDa
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IgnisDa commented Feb 13, 2024

@ellsclytn I released it as v4.2.5.

@diogovalentte
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I'm suffering from the same issue, at 01h25 in my timezone (UTC-3), the CPU usage of the Ryot container greatly increases. The graph below is my CPU usage:

image

This CPU usage continues for days. If I restart the container, it goes back to normal until the next 01h25.

@ellsclytn
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I tried removing the number of monitored shows. There were more than I realised, but not many. It's now down to three. That's certainly helped, but it does appear the problem persists (and gets consistently worse with a higher monitoring count). The CPU usage seems to "stack" each time the midnight cron job fires off.

I was able to confirm that setting DISABLE_UPDATE_WATCHLIST_MEDIA=true worked around the issue for me.

As for logs, I haven't seen a great deal that jumped out at me. The only thing that seemed a little different now was that some shows have quite a large log output which I think coincided with some more recent changes where the webhook path changed for the Jellyfin integration. Example of large output:

[backend] 2024-02-21T08:03:44.392967Z DEBUG ryot::miscellaneous::resolver: Progress update = Model { id: 10877, progress: 100, started_on: Some(2024-02-21), finished_on: Some(2024-02-21), user_id: 1, metadata_id: 479, state: Completed, updated_at: [2024-02-21T07:51:28.102148Z, 2024-02-21T07:51:29.076844Z, 2024-02-21T07:51:29.082814Z, 2024-02-21T07:51:30.083490Z, 2024-02-21T07:51:31.077929Z, 2024-02-21T07:51:32.057250Z, 2024-02-21T07:51:33.076630Z, 2024-02-21T07:51:34.072888Z, 2024-02-21T07:51:35.063937Z, 2024-02-21T07:51:36.078455Z, 2024-02-21T07:51:37.068737Z, 2024-02-21T07:51:38.082010Z, 2024-02-21T07:51:39.083784Z, 2024-02-21T07:51:40.088666Z, 2024-02-21T07:51:41.068606Z, 2024-02-21T07:51:42.077457Z, 2024-02-21T07:51:43.078821Z, 2024-02-21T07:51:44.079512Z, 2024-02-21T07:51:45.083775Z, 2024-02-21T07:51:46.072185Z, 2024-02-21T07:51:47.098788Z, 2024-02-21T07:51:48.101506Z, 2024-02-21T07:51:49.095454Z, 2024-02-21T07:51:50.084703Z, 2024-02-21T07:51:51.090321Z, 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2024-02-21T08:03:15.352210Z, 2024-02-21T08:03:16.343630Z, 2024-02-21T08:03:17.343574Z, 2024-02-21T08:03:18.358258Z, 2024-02-21T08:03:19.453335Z, 2024-02-21T08:03:20.359213Z, 2024-02-21T08:03:21.361006Z, 2024-02-21T08:03:21.384404Z, 2024-02-21T08:03:22.368183Z, 2024-02-21T08:03:23.366537Z, 2024-02-21T08:03:24.355065Z, 2024-02-21T08:03:25.363222Z, 2024-02-21T08:03:26.363548Z, 2024-02-21T08:03:27.364691Z, 2024-02-21T08:03:28.373064Z, 2024-02-21T08:03:29.371607Z, 2024-02-21T08:03:30.357086Z, 2024-02-21T08:03:31.363181Z, 2024-02-21T08:03:32.363472Z, 2024-02-21T08:03:33.374042Z, 2024-02-21T08:03:34.375779Z, 2024-02-21T08:03:35.375096Z, 2024-02-21T08:03:36.359369Z, 2024-02-21T08:03:37.368009Z, 2024-02-21T08:03:38.368055Z, 2024-02-21T08:03:39.354172Z, 2024-02-21T08:03:40.368468Z, 2024-02-21T08:03:41.368538Z, 2024-02-21T08:03:42.379286Z, 2024-02-21T08:03:43.385206Z, 2024-02-21T08:03:44.384502Z], show_extra_information: Some(SeenShowExtraInformation { season: 5, episode: 9 }), podcast_extra_information: None, anime_extra_information: None, manga_extra_information: None, last_updated_on: 2024-02-21T08:03:44.384502Z, num_times_updated: 668 }

I suspect this is unrelated though as the issue has been going on longer than this sort of data has been present.

For each of the monitored shows, they all have Updating metadata for <ID> and Updated metadata for <ID> within seconds, so at first glance it doesn't seem as though it's getting stuck on any shows.

I also don't have any notification systems configured (intentionally). Would I be right in saying Ryot will avoid trying to send any notifications if there is no notification system configured?

@IgnisDa
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IgnisDa commented Feb 22, 2024

I was able to confirm that setting DISABLE_UPDATE_WATCHLIST_MEDIA=true worked around the issue for me.

Yep, you're right. I believe it is not actual metadata update that is causing the problem but the associated person data being updated that is the problem. Shows have a lot of people associated with them, the problem compounds with more of them being monitored.

I haven't been able to come up with a satisfactory way to deal with this problem. But I will be focusing on this in the coming months.

I also don't have any notification systems configured (intentionally). Would I be right in saying Ryot will avoid trying to send any notifications if there is no notification system configured?

Sending notifications is just a for-loop, so if your server has none configured, it is effectively a no-op. I don't think that is related to the over-arching issue here at all.

@ellsclytn
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I wonder, would it be a complex change to allow the person tracking functionality to be disabled? Mainly as a workaround, but I'll also admit that I don't personally have much use for the person tracking stuff. Understandable if that's easier said than done though.

@IgnisDa
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IgnisDa commented Feb 22, 2024

I have thought of a solution that will enable Ryot to not be so aggressive with getting person/group details. This will also enable me to finally work #580 and #444.

@IgnisDa
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IgnisDa commented Feb 25, 2024

@ellsclytn I think I finally got it. The idle CPU usage is still a bit high (~8-15%) for my liking, but the spike seems to be no longer happening. Can you confirm on your instance too?

@ellsclytn
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Sure thing, I've just switched to 4.2.10. I'll leave it for 2 days and let you know how it goes.

@IgnisDa
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IgnisDa commented Feb 25, 2024

Note to self:

There still seems to be a huge spike every minute:
image

This is probably due to the usage of apalis.

EDIT: This was not being caused by Ryot. It was being caused by other containers.

Here is the CPU usage by Ryot:

image

@ellsclytn
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Last two days have been looking a lot better 🎉

image

@IgnisDa
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IgnisDa commented Feb 29, 2024

I think this can be finally closed. Thanks everyone who helped me debug it!

If anyone is interested in knowing what the problem was, I wrote a small write up on my blog.

@IgnisDa IgnisDa closed this as completed Feb 29, 2024
@IgnisDa IgnisDa unpinned this issue Feb 29, 2024
@IgnisDa
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IgnisDa commented Jun 4, 2024

Another small update: after v6, idle CPU usage should pretty much drop to 0%.

image

(Made changes to the scheduler backend so that it reads new jobs directly from memory instead of sqlite).

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