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DataciteXML changes Plus RelationType field #10632

Merged
merged 122 commits into from
Sep 23, 2024
Merged

DataciteXML changes Plus RelationType field #10632

merged 122 commits into from
Sep 23, 2024

Commits on May 31, 2024

  1. separate metadata parsing/params from XML generation code

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    qqmyers committed May 31, 2024
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  2. extract some common xml writing util code

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    qqmyers committed May 31, 2024
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  3. note duplicate method

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    qqmyers committed May 31, 2024
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  4. remove xml template doc, refactor to generate xml, adding OA fields

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    qqmyers committed May 31, 2024
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  5. refactor source of XML info

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    qqmyers committed May 31, 2024
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  6. add code to get raw alphanumeric pid value

    @qqmyers
    qqmyers committed May 31, 2024
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  7. remove duplicate method

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    qqmyers committed May 31, 2024
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  8. dates, resourceType, alternate Ids

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    qqmyers committed May 31, 2024
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  9. more methods

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    qqmyers committed May 31, 2024
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  10. only one field to look for

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    qqmyers committed May 31, 2024
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  11. use common util method

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    qqmyers committed May 31, 2024
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  12. access rights descriptions, geolocations, funding refs

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    qqmyers committed May 31, 2024
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  13. altTitles npe

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    qqmyers committed May 31, 2024
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  14. fixes and test

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    qqmyers committed May 31, 2024
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  15. fix for empty rel pub entry

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    qqmyers committed May 31, 2024
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  16. bugs: remove bad nesting, dupe values

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    qqmyers committed May 31, 2024
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  17. add XML Validation to test

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    qqmyers committed May 31, 2024
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  18. fix contributorType

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    qqmyers committed May 31, 2024
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  19. add geolocations element and multiple geolocation

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  20. typos

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  21. try execute inside the main method 

    trying to avoid a separate tx boundary
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    qqmyers committed May 31, 2024
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  22. Fix subject, keyword

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    qqmyers committed May 31, 2024
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  23. fix geo coverage

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    qqmyers committed May 31, 2024
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  24. adjust funders to include grant number, add xml escaping for description

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    qqmyers committed May 31, 2024
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  25. bug: add dataset descriptions

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    qqmyers committed May 31, 2024
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  26. typo, add xml escape for funder

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  27. still typo

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  28. mark contact as deprecated - unused

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    qqmyers committed May 31, 2024
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  29. more fixes

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  30. catch parseexception

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    qqmyers committed May 31, 2024
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  31. fix alternateIdentifier, related PID parsing, series

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    qqmyers committed May 31, 2024
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  32. catch PID update exception to avoid corrupt dataset

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    qqmyers committed May 31, 2024
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  33. try long sleep

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    qqmyers committed May 31, 2024
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  34. set dv released before pid publicize, go back to short time

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    qqmyers committed May 31, 2024
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  35. always use latest version for copy

    @qqmyers
    qqmyers committed May 31, 2024
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  36. handle deaccession, fix relatedIDtype for files

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    qqmyers committed May 31, 2024
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  37. missed assignment for title

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    qqmyers committed May 31, 2024
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  38. fix creator for deaccessioned

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    qqmyers committed May 31, 2024
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  39. correct fix for creators when deaccessioned

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    qqmyers committed May 31, 2024
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  40. remove bad value and lang

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    qqmyers committed May 31, 2024
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  41. add creatorName sub element for deaccession/no names case

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    qqmyers committed May 31, 2024
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  42. typo

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    qqmyers committed May 31, 2024
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  43. fix resourceType - always 1 entry

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    qqmyers committed May 31, 2024
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  44. Also handle file case for resourceType

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    qqmyers committed May 31, 2024
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  45. missed changes

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    qqmyers committed May 31, 2024
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  46. simplify - util checks for null and empty

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    qqmyers committed May 31, 2024
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Commits on Jun 10, 2024

  1. typo in DOI parsing logic

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    qqmyers committed Jun 10, 2024
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Commits on Jun 14, 2024

  1. only files in latestversionforcopy

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    qqmyers committed Jun 14, 2024
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  2. Merge remote-tracking branch 'IQSS/develop' into datacite_xml_improve… 

    …ments
    @qqmyers
    qqmyers committed Jun 14, 2024
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  3. fix date parsing, clear bad values

    @qqmyers
    qqmyers committed Jun 14, 2024
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  4. relationType entry in citation block

    @qqmyers
    qqmyers committed Jun 14, 2024
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  5. missing element for openaireutil test

    @qqmyers
    qqmyers committed Jun 14, 2024
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  6. contributor type null fix

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    qqmyers committed Jun 14, 2024
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  7. add relationType to base code and DataCite XML

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    qqmyers committed Jun 14, 2024
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  8. add relationType to above fold display

    @qqmyers
    qqmyers committed Jun 14, 2024
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  9. typos

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    qqmyers committed Jun 14, 2024
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  10. handle blank id no and styling in above fold summary

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    qqmyers committed Jun 14, 2024
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Commits on Jun 19, 2024

  1. skip blanks in geo place name entries

    @qqmyers
    qqmyers committed Jun 19, 2024
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  2. use ; to separate kindOfData / resourceTypes

    @qqmyers
    qqmyers committed Jun 19, 2024
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  3. add Time Period as Other Date

    @qqmyers
    qqmyers committed Jun 19, 2024
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  4. support available and updated dates for dataset and file

    @qqmyers
    qqmyers committed Jun 19, 2024
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  5. fix file updated logic

    @qqmyers
    qqmyers committed Jun 19, 2024
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  6. Merge branch 'datacite_xml_improvements' into datacite_plus_relPubRel… 

    …Type
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    qqmyers committed Jun 19, 2024
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  7. fix no relType styling

    @qqmyers
    qqmyers committed Jun 19, 2024
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  8. handle null

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    qqmyers committed Jun 19, 2024
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Commits on Jun 26, 2024

  1. add HasPart rels - logic issue

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    qqmyers committed Jun 26, 2024
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  2. catch additional exception type

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    qqmyers committed Jun 26, 2024
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  3. Merge branch 'datacite_xml_improvements' into 

    datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Jun 26, 2024
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  4. fix rendering with a span

    @qqmyers
    qqmyers committed Jun 26, 2024
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  5. missing imports, null check

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    qqmyers committed Jun 26, 2024
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  6. Merge remote-tracking branch 'IQSS/develop' into datacite_xml_improve… 

    …ments
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  7. Merge branch 'datacite_xml_improvements' into 

    datacite_plus_relPubRelType
    @qqmyers
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Commits on Jul 19, 2024

  1. Merge remote-tracking branch 'IQSS/develop' into datacite_xml_improve… 

    …ments
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  2. Merge branch 'datacite_xml_improvements' into datacite_plus_relPubRel… 

    …Type
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    qqmyers committed Jul 19, 2024
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Commits on Jul 21, 2024

  1. fix ROR identification

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    qqmyers committed Jul 21, 2024
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  2. passthrough for ext cvv/ROR affiliation update

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    qqmyers committed Jul 21, 2024
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  3. Merge branch 'datacite_xml_improvements' into datacite_plus_relPubRel… 

    …Type
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  4. Merge branch 'datacite_xml_improvements' into 

    datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Jul 21, 2024
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  5. add relation type values

    @qqmyers
    qqmyers committed Jul 21, 2024
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  6. fix case

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    qqmyers committed Jul 21, 2024
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Commits on Sep 3, 2024

  1. Merge remote-tracking branch 'IQSS/develop' into 

    datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Sep 3, 2024
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  2. missing empty watermark entry

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    qqmyers committed Sep 3, 2024
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  3. fix capitalization

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    qqmyers committed Sep 3, 2024
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  4. Merge remote-tracking branch 'IQSS/develop' into 

    datacite_xml_improvements
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Commits on Sep 6, 2024

  1. Merge remote-tracking branch 'IQSS/develop' into 

    datacite_xml_improvements
    @qqmyers
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  2. Merge branch 'datacite_xml_improvements' into 

    datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Sep 6, 2024
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  3. fix test

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    qqmyers committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. update tests - added one field in citation block

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    qqmyers committed Sep 9, 2024
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  2. release note

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    qqmyers committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. support no pubIdType for URLs

    @qqmyers
    qqmyers committed Sep 10, 2024
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  2. direct people to the log for failures - they aren't in the response

    @qqmyers
    qqmyers committed Sep 10, 2024
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  3. bug - the _target url isn't being set elsewhere

    @qqmyers
    qqmyers committed Sep 10, 2024
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  4. avoid failing when the entity is null for error statuses

    @qqmyers
    qqmyers committed Sep 10, 2024
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  5. don't update unpublished files - no need and it will fail 

    the updateIdentifier call is checking for the findable metadata which is
not available before publication.
(We don't update DataCite after dataset edits, so unpublished datasets
don't go through here, but unpublished files on published datasets would
hit this code)
    @qqmyers
    qqmyers committed Sep 10, 2024
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  6. lower logging, add null check on relatedIdentifier

    @qqmyers
    qqmyers committed Sep 10, 2024
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  7. Change to use POST for all

    @qqmyers
    qqmyers committed Sep 10, 2024
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  8. Documentation and updated release note

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    qqmyers committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. Merge remote-tracking branch 'IQSS/develop' into datacite_plus_relPub… 

    …RelType
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    qqmyers committed Sep 11, 2024
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  2. test fix - number of fields

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    qqmyers committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. update release note

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    qqmyers committed Sep 12, 2024
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  2. check for ROR in grantAgency field too

    @qqmyers
    qqmyers committed Sep 12, 2024
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  3. adopt using CDI, fix funderIdentifier element per schema

    @qqmyers
    qqmyers committed Sep 12, 2024
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  4. release note/changelog changes

    @qqmyers
    qqmyers committed Sep 12, 2024
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Commits on Sep 13, 2024

  1. don't send contributors w/o contributorType

    @qqmyers
    qqmyers committed Sep 13, 2024
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  2. relatedIdentifierType is required

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    qqmyers committed Sep 13, 2024
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Commits on Sep 14, 2024

  1. flip to prefer identifier over url 

    seeing cases at QDR where the type is DOI, the identifier is the doi and
the URL is a non-DOI reference (e.g. at pubmed).
    @qqmyers
    qqmyers committed Sep 14, 2024
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  2. Handle case where type is set but there's no identifier

    @qqmyers
    qqmyers committed Sep 14, 2024
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  3. map non-standard contributors to Other, remove unused imports

    @qqmyers
    qqmyers committed Sep 14, 2024
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  4. Treat missing contrib type as Other

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    qqmyers committed Sep 14, 2024
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Commits on Sep 17, 2024

  1. avoid spurious log warning for others e.g. isbn 

    these were going through the default check for URLs and failing (not a
url) leading to a warning. The new code should try URL parsing for URLs,
try PID and URL parsing for ones with no type specified, and send the
rest of the identifiers w/o any additional (optional) attributes.
    @qqmyers
    qqmyers committed Sep 17, 2024
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  2. changes per review

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    qqmyers committed Sep 17, 2024
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  3. Merge remote-tracking branch 'IQSS/develop' into datacite_plus_relPub… 

    …RelType
    @qqmyers
    qqmyers committed Sep 17, 2024
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  4. Apply suggestions from code review 

    Co-authored-by: Philip Durbin <philipdurbin@gmail.com>
    @qqmyers @pdurbin
    qqmyers and pdurbin committed Sep 17, 2024
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  5. Merge branch 'datacite_plus_relPubRelType' of https://github.com/Qual… 

    …itativeDataRepository/dataverse.git into datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Sep 17, 2024
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  6. cleaner formatting

    @qqmyers
    qqmyers committed Sep 17, 2024
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  7. minor doc tweak IQSS#10632

    @pdurbin
    pdurbin committed Sep 17, 2024
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  8. No longer needed with use of CDI.current() in XMLMetadataTemplate

    @qqmyers
    qqmyers committed Sep 17, 2024
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  9. no longer used and CrossRef ended up using it's own.

    @qqmyers
    qqmyers committed Sep 17, 2024
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  10. Merge branch 'datacite_plus_relPubRelType' of https://github.com/Qual… 

    …itativeDataRepository/dataverse.git into datacite_plus_relPubRelType
    @qqmyers
    qqmyers committed Sep 17, 2024
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  11. add more info about the scope of changes.

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    qqmyers committed Sep 17, 2024
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Commits on Sep 23, 2024

  1. set dataset type before registering pid (which needs the type)

    @qqmyers
    qqmyers committed Sep 23, 2024
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  2. Merge remote-tracking branch 'IQSS/develop' into datacite_plus_relPub… 

    …RelType
    @qqmyers
    qqmyers committed Sep 23, 2024
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