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@HPCBio

High Performance Computing in Biology

High performance computational biology at the University of Illinois

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  1. 16S-rDNA-dada2-pipeline 16S-rDNA-dada2-pipeline Public

    **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version

    Nextflow 19 19

  2. In-depth-NGS-Data-Analysis-Course In-depth-NGS-Data-Analysis-Course Public

    Forked from hbctraining/In-depth-NGS-Data-Analysis-Course

    Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

    HTML 2 1

  3. eib-marker-design eib-marker-design Public

    Workflow for designing KASP markers from resequencing data

    R 2 2

  4. EMIRGE EMIRGE Public

    Forked from csmiller/EMIRGE

    EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

    Python 1

  5. R-genomics R-genomics Public

    Forked from datacarpentry/R-genomics

    Lesson on data analysis and visualization in R for genomics

    HTML 1

  6. Data-Management Data-Management Public

    Data Carpentry data management course, combining CSE and HPCBio materials

    1

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