Small fixes #53

ftostevin-ont · 2021-09-23T10:23:00Z

A collection of small fixes:

fix typo in script options
extend fallback for model predictions where alts lack read support to more cases
output current best model in addition to model at each epoch
log training losses to file
log when starting from an existing model
allow users to specify a min_indel_af less than the configuration default

…orm default

has insufficient read coverage

ftostevin-ont added 8 commits September 23, 2021 10:58

fix typo in fa_model_prefix command option

906b006

pileup: allow the user to specify a min_indel_af lower than the platf…

0e20eaa

…orm default

expand fall through to next most likely variant if network prediction

09a7d18

has insufficient read coverage

remove maximum fallback depth

a366874

fix typo in training callback variable name

2a7d705

output current best val_loss model separately from models at each epoch

f21bce7

log training losses at each epoch to a separate file

67db08d

log when we start training from an existing model

fd01d26

aquaskyline mentioned this pull request Sep 24, 2021

Add wrapper scripts to pipe training tensors directly to Tensor2Bin #55

Merged

zhengzhenxian merged commit be99492 into HKU-BAL:main Sep 29, 2021

ftostevin-ont deleted the small_fixes branch April 29, 2022 12:19

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