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@GP2code

Global Parkinson's Genetics Program - Code

https://parkinsonsroadmap.org/gp2/
README.md

Official GP2 Code Organization and Repositories

Welcome to the official Global Parkinson's Genetics Program (GP2) code repositories!

Current Release

Our latest release is release 8, last updated September 2024.

  • Blog post here
  • DOI: 10.5281/zenodo.13755496
  • When using GP2 release 8 data please use the following acknowledgement:

“Data (DOI 10.5281/zenodo.13755496, release 8) used in the preparation of this article were obtained from the Global Parkinson’s Genetics Program (GP2).”

For a list of previous releases and DOIs, please see here

Additional details will be added soon

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  1. GenoTools GenoTools Public

    Forked from dvitale199/GenoTools

    A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

    Python 13 3

  2. GP2-WorkingGroups GP2-WorkingGroups Public

    These are repositories and projects directly from GP2 members

    WDL 2

  3. NeuroBoosterArray NeuroBoosterArray Public

    Forked from mikeDTI/GloboNeuroArray

    Process and code for building content lists for NeuroBoosterArray.

  4. releases releases Public

    Code from various GP2 releases in perpetuity.

    WDL 1 1

Repositories

Showing 10 of 21 repositories
  • DNAJC13-PD-GeneBurden Public
    GP2code/DNAJC13-PD-GeneBurden’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 26, 2024
  • PAR-ADPD Public
    GP2code/PAR-ADPD’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 25, 2024
  • releases Public

    Code from various GP2 releases in perpetuity.

    GP2code/releases’s past year of commit activity
    WDL 1 1 0 0 Updated Sep 23, 2024
  • .github Public
    GP2code/.github’s past year of commit activity
    0 0 0 0 Updated Sep 23, 2024
  • GenoTools Public Forked from dvitale199/GenoTools

    A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

    GP2code/GenoTools’s past year of commit activity
    Python 13 Apache-2.0 7 0 0 Updated Aug 27, 2024
  • EUR_LRRK2_pL1795F Public

    This is the online repository for the manuscript titled "The LRRK2 p.L1795F variant causes Parkinson’s disease in the European population"

    GP2code/EUR_LRRK2_pL1795F’s past year of commit activity
    0 0 0 0 Updated Aug 20, 2024
  • GBA1-rs3115534-branchpoint Public

    This is the online repository for the manuscript titled "African ancestry neurodegeneration risk variant disrupts an intronic branchpoint in GBA1"

    GP2code/GBA1-rs3115534-branchpoint’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 19, 2024
  • GP2-AFR-AAC-metaGWAS Public

    All materials for "Genome-wide Association Identifies Novel Etiological Insights Associated with Parkinson’s Disease in African and African Admixed Populations"

    GP2code/GP2-AFR-AAC-metaGWAS’s past year of commit activity
    Jupyter Notebook 3 1 1 0 Updated Aug 15, 2024
  • NeuroBoosterArray Public Forked from mikeDTI/GloboNeuroArray

    Process and code for building content lists for NeuroBoosterArray.

    GP2code/NeuroBoosterArray’s past year of commit activity
    0 1 0 0 Updated Jul 11, 2024
  • GP2-WorkingGroups Public

    These are repositories and projects directly from GP2 members

    GP2code/GP2-WorkingGroups’s past year of commit activity
    WDL 0 2 0 0 Updated May 13, 2024
View all repositories

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