Generate FlyBase BLAST Configuration #3
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| name: Generate FlyBase BLAST Configuration | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| FB-release: | |
| required: true | |
| dmel-annot-release: | |
| required: true | |
| jobs: | |
| generate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| - name: Set up python | |
| id: setup-python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| - name: Install dependencies | |
| run: poetry install --no-interaction --no-root | |
| - name: Generate configuration | |
| run: poetry run python -m blast_db_configuration --release ${{ github.event.inputs.FB-release }} --dmel-annot-release ${{ github.event.inputs.dmel-annot-release }} | |
| - name: Create PR | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| commit-message: ${{ github.event.inputs.FB-release }} BLAST config | |
| branch: ${{ github.event.inputs.FB-release }}-blast-config | |
| delete-branch: true | |
| title: '[Update] ${{ github.event.inputs.FB-release }} BLAST config' | |
| body: | | |
| ${{ github.event.inputs.FB-release }} BLAST config | |
| draft: false |