Generate FlyBase BLAST Configuration #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Generate FlyBase BLAST Configuration | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| FB-release: | |
| required: true | |
| dmel-annot-release: | |
| required: true | |
| jobs: | |
| generate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| - name: Set up python | |
| id: setup-python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies if cache does not exist | |
| #---------------------------------------------- | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| - name: Generate configuration | |
| run: poetry run generate --release ${{ github.event.inputs.FB-release }} --dmel-annot-release ${{ github.event.inputs.dmel-annot-release }} | |
| - name: Create PR | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| commit-message: ${{ github.event.inputs.FB-release }} BLAST config | |
| branch: ${{ github.event.inputs.FB-release }}-blast-config | |
| delete-branch: true | |
| title: '[Update] ${{ github.event.inputs.FB-release }} BLAST config' | |
| body: | | |
| ${{ github.event.inputs.FB-release }} BLAST config | |
| draft: false |