GTDB 226

Download started on the 14th of September 2024 LPSN Downloaded on the 18th of September Assembly summary for Fungi downloaded on the 21st of September

When running hmmsearch:

• GCA_002870245.1
• GCA_000722275.1
• GCA_000722025.1
• GCA_000722095.1
• GCA_000722035.1
• GCA_000722415.1
• GCA_000722115.1
• GCA_000715975.1
• GCA_000721965.1
• GCA_000716225.1
• GCA_000716135.1
• GCA_000716285.1
• GCA_001578415.1
• GCA_001341675.1 are skipped because the protein file _protein.faa is empty

we remove genomes from the genome_dirs file because they dont have a genomic_fna file.

• GCF_041410205.1
• GCF_033353635.1
• GCA_041877085.1

Version used for this release:

• Silva : 138.2
• LTP : 08_2023

When update the NCBI taxonomy for all the genomes in the database, 5 of them did not have a taxonomy, I did add them manually:

• GCF_025895605.1
• GCF_037414725.1
• GCF_037414705.1
• GCF_014656475.1
• GCF_037478275.1