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34 Open 87 Closed
34 Open 87 Closed
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Issues list

Limited qc_gene_list_mouse.csv enhancement New feature or request
#313 opened Oct 9, 2024 by JarneBelien
@bio-la @deevdevil88 @giuliaelgarcia
mouse cc genes option should be added to documentation documentation Improvements or additions to documentation
#310 opened Aug 20, 2024 by JarneBelien
@giuliaelgarcia
1
MOFA: >1TB RAM needed for ATAC
#308 opened Aug 20, 2024 by wlason
@wlason
No control over number of PCs in batch_correct_none
#307 opened Aug 13, 2024 by wlason
1
@SarahOuologuem
1
MultiVI issue with PyTorch
#306 opened Aug 6, 2024 by wlason
2
Combat integration removed from panpipes documentation Improvements or additions to documentation
#300 opened Jul 26, 2024 by wlason
@bio-la
GPU-enabled multiVI integration yaml issue
#299 opened Jul 26, 2024 by wlason
Error in ingestion of protein metadata table where first column = protein names
#297 opened Jul 25, 2024 by JP-KIR
Consistency in ATAC dimensionality reduction between preprocess and integration yamls
#294 opened Jul 22, 2024 by wlason
1
MultiVI: no integration_col_categorical argument
#293 opened Jul 16, 2024 by wlason
@bio-la
Multi-sample multiome data
#290 opened Jun 28, 2024 by bio-la
2 tasks
@bio-la
MultiVI fixes and installation enhancement New feature or request
#289 opened Jun 28, 2024 by bio-la
3 tasks
@bio-la
Panpipes ingest errros in writing out a concatenated MuData object when hashing abs are present in the prot modailty bug Something isn't working
#280 opened Jun 4, 2024 by deevdevil88
2
panpipes visualisations, legend point size is being weird
#260 opened Apr 22, 2024 by deevdevil88
3
Problems with Harmony k-means calculation
#239 opened Mar 20, 2024 by wlason
2
500,000 nuclei of multiome data has very high memory requirements for batch correction (1.2 TB)
#214 opened Mar 6, 2024 by mgrantpeters
1
scanvi refmap fails when query_celltype not specified in yaml
#213 opened Mar 5, 2024 by wlason
1
Refmap fails if protein slot present in mudata
#207 opened Mar 2, 2024 by wlason
create clustering yaml documentation documentation Improvements or additions to documentation
#195 opened Feb 23, 2024 by bio-la
@deevdevil88 @giuliaelgarcia
fixes on pipeline_ingestion_docs
#183 opened Feb 15, 2024 by bio-la
3 tasks
@bio-la
troubleshooting page
#174 opened Feb 14, 2024 by bio-la
1 of 2 tasks
@SarahOuologuem @giuliaelgarcia
adding actions to follow each tutorial
#172 opened Feb 13, 2024 by bio-la
6 of 11 tasks
@kevinrue
1
additional QCs enhancement New feature or request
#151 opened Dec 20, 2023 by bio-la
@SarahOuologuem
rename X_scVI to X_scvi in integration
#137 opened Nov 24, 2023 by bio-la
check for scaling in .X
#136 opened Nov 24, 2023 by bio-la
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