Initial import from 2016.04.00 release: svn r10081

Excluded the following files:

**Executable Files**

./iREVEAL/config/Kriging/krig.exe:	PE32 executable for MS Windows (console) Intel 80386 32-bit
./iREVEAL/config/Kriging/rom.exe:	PE32 executable for MS Windows (console) Intel 80386 32-bit

**IDE Configuration Files**

./DataModelProject/.project:	XML  document text
./iREVEAL/.buildpath:	XML  document text
./iREVEAL/.classpath:	XML  document text
./iREVEAL/.project:	XML  document text
./iREVEAL/.pydevproject:	XML  document text

**Archive Files**
./iREVEAL/lib/gson-2.2.4.jar:	Zip archive data, at least v1.0 to extract
./required_packages.zip:	Zip archive data, at least v2.0 to extract

.gitignore

@@ -0,0 +1,4 @@
+*.exe
+*.jar
+*.zip
+.DS_Store

DataModelProject/.project

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+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>DataModelFiles</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+	</buildSpec>
+	<natures>
+	</natures>
+</projectDescription>

DataModelProject/DataModel/Alias.java

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+package DataModel;
+
+import java.io.Serializable;
+import com.google.gson.*;
+import com.google.gson.annotations.Expose;
+
+/**
+ * Class for assigning an alias
+ * @author port091
+ *
+ */
+public class Alias implements Serializable {
+
+	private static final long serialVersionUID = 7248170918564092331L;
+
+	@Expose
+	private String name;
+
+	private String alias;
+
+	/**
+	 * Creates an easy way to alias names
+	 * @param name
+	 * @param alias
+	 */
+	Alias(String name, String alias) {
+		this.setName(name);
+		this.setAlias(alias);
+	}
+
+	/**
+	 * No Alias provided, use real name
+	 * @param name
+	 */
+	Alias(String name) {
+		this(name, name);
+	}
+
+	/**
+	 * No Name or Alias provided
+	 * @param name
+	 */
+	Alias() {
+		this.setName("");
+		this.setAlias("");
+	}
+
+	public String getName() {
+		return name;
+	}
+
+	public void setName(String name) {
+		this.name = name;
+	}
+
+	public String getAlias() {
+		return alias;
+	}
+
+	public void setAlias(String alias) {
+		this.alias = alias;
+	}
+
+	@Override
+	public String toString() {
+		return alias;
+	}
+
+}

DataModelProject/DataModel/FlowBoundary.java

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+package DataModel;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.List;
+import com.google.gson.*;
+import com.google.gson.annotations.Expose;
+
+/**
+ * Class representing an inlet or outlet boundary condition
+ * @author Jinliang Ma at NETL
+ */
+public class FlowBoundary implements Serializable
+{
+
+	//flag to indicate if gas phase exits at the boundary
+	@Expose
+	private boolean hasGasPhase;
+
+	//flag to indicate if solid phases exit at the boundary
+	@Expose
+	private boolean hasSolidPhase;
+
+	//boundary index used by CFD code. MFIX is 1-based
+	@Expose
+	private int boundaryIndex;
+
+	//boundary name, user might need to specify. converted to port name for PME
+	@Expose
+	private String boundaryName;
+
+	//gas phase mixture
+	@Expose
+	private List<GasMixture> gasMixture;
+
+	//a list of solid phase mixtures
+	@Expose
+	private List<SolidMixture> solidMixtures;
+
+	//constructor with default boundary index and boundary name
+	public FlowBoundary()
+	{
+		hasGasPhase = true;
+		hasSolidPhase = false;
+		boundaryIndex = 1;
+		boundaryName = "Boundary";
+		gasMixture = new ArrayList<GasMixture>();
+		solidMixtures = new ArrayList<SolidMixture>();
+	}
+
+	//constructor with given boundary index and boundary name
+	public FlowBoundary(int i, String name)
+	{
+		hasGasPhase = true;
+		hasSolidPhase = false;
+		boundaryIndex = i;
+		boundaryName = name;
+		gasMixture = new ArrayList<GasMixture>();
+		solidMixtures = new ArrayList<SolidMixture>();
+	}
+
+	public boolean hasGasPhase()
+	{
+		return hasGasPhase;
+	}
+
+	public void enableGasPhase(boolean b)
+	{
+		hasGasPhase = b;
+	}
+
+	public boolean hasSolidPhase()
+	{
+		return hasSolidPhase;
+	}
+
+	public void enableSolidPhase(boolean b)
+	{
+		hasSolidPhase = b;
+	}
+
+	public int getBoundaryIndex()
+	{
+		return boundaryIndex;
+	}
+
+	public void setBoundaryIndex(int i)
+	{
+		boundaryIndex = i;
+	}
+
+	public String getBoundaryName()
+	{
+		return boundaryName;
+	}
+
+	public void setBoundaryName(String name)
+	{
+		boundaryName = name;
+	}
+
+	public List<GasMixture> getGasMixture()
+	{
+		return gasMixture;
+	}
+
+	public void setGasMixture(List<GasMixture> gm)
+	{
+		gasMixture = gm;
+	}
+
+	public List<SolidMixture> getSolidMixtures()
+	{
+		return solidMixtures;
+	}
+
+	public void setSolidMixtures(List<SolidMixture> sms)
+	{
+		solidMixtures = sms;
+	}
+
+	//append all available input parameters to a list
+	public void appendAllInputsToParameterList(List<Parameter> paramList)
+	{
+		if (hasGasPhase)
+			gasMixture.get(0).appendAllInputsToParameterList(paramList);
+		if (hasSolidPhase)
+		{
+			for (SolidMixture sm : solidMixtures)
+				sm.appendAllInputsToParameterList(paramList);
+		}
+	}
+
+	//append varied input parameters to a list as ROM input vector
+	public void appendVariedInputsToParameterList(List<Parameter> paramList)
+	{
+		if (hasGasPhase)
+			gasMixture.get(0).appendVariedInputsToParameterList(paramList);
+		if (hasSolidPhase)
+		{
+			for (SolidMixture sm : solidMixtures)
+				sm.appendVariedInputsToParameterList(paramList);
+		}
+	}
+
+	//append all output parameters to a list as ROM output vector
+	public void appendOutputsToParameterList(List<Parameter> paramList)
+	{
+		if (hasGasPhase)
+			gasMixture.get(0).appendOutputsToParameterList(paramList);
+		if (hasSolidPhase)
+		{
+			for (SolidMixture sm : solidMixtures)
+				sm.appendOutputsToParameterList(paramList);
+		}
+	}
+}

DataModelProject/DataModel/GasMixture.java

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+package DataModel;
+
+import java.io.Serializable;
+import java.util.List;
+import com.google.gson.*;
+import com.google.gson.annotations.Expose;
+
+
+/**
+ * Class representing a gas mixture of multiple speices
+ * @author Jinliang Ma at NETL
+ */
+public class GasMixture extends Mixture implements Serializable
+{
+	//pressure
+	@Expose
+	private Parameter pressure;
+
+	//temperature
+	@Expose
+	private Parameter temperature;
+
+	//volume fraction or void factor
+	@Expose
+	private Parameter volumeFraction;
+
+
+	public GasMixture()
+	{
+		super();
+		pressure = new Parameter("Pressure");
+		pressure.setAllValues(101325.0f);		//ambient pressure
+		temperature = new Parameter("Temperature");
+		temperature.setAllValues(298.15f);		//ambient temperature
+		volumeFraction = new Parameter("VolumeFraction");
+		volumeFraction.setDefaultValue(1.0f);	//gas phase only
+	}
+
+	public Parameter getPressure()
+	{
+		return pressure;
+	}
+
+	public void setPressure(Parameter p)
+	{
+		pressure = p;
+	}
+
+	public Parameter getTemperature()
+	{
+		return temperature;
+	}
+
+	public void setTemperature(Parameter t)
+	{
+		temperature = t;
+	}
+
+	public Parameter getVolumeFraction()
+	{
+		return volumeFraction;
+	}
+
+	public void setVolumeFraction(Parameter vf)
+	{
+		volumeFraction = vf;
+	}
+
+	//append all available input parameters to a list, valid for inlet boundary only
+	public void appendAllInputsToParameterList(List<Parameter> paramList)
+	{
+		paramList.add(pressure);
+		paramList.add(temperature);
+		paramList.add(volumeFraction);
+		super.appendAllInputsToParameterList(paramList);
+	}
+
+	//append varied input parameters to a list, valid for inlet boundary only
+	public void appendVariedInputsToParameterList(List<Parameter> paramList)
+	{
+		if (pressure.isVaried())
+			paramList.add(pressure);
+		if (temperature.isVaried())
+			paramList.add(temperature);
+		if (volumeFraction.isVaried())
+			paramList.add(volumeFraction);
+		super.appendVariedInputsToParameterList(paramList);
+	}
+
+	//append all output parameters to a list, valid for outlet boundary only
+	public void appendOutputsToParameterList(List<Parameter> paramList)
+	{
+		//some outlet boundary conditions could be fixed such as back pressure, still check isVaried flag
+		if (pressure.isVaried())
+			paramList.add(pressure);
+		if (temperature.isVaried())
+			paramList.add(temperature);
+		if (volumeFraction.isVaried())
+			paramList.add(volumeFraction);
+		super.appendOutputsToParameterList(paramList);
+	}
+
+	public void setAllParemeterAliasAs(String str)
+	{
+		super.setAllParemeterAliasAs(str);
+		pressure.setAlias(str);
+		temperature.setAlias(str);
+		volumeFraction.setAlias(str);
+	}
+}