Drop literature values from regions that are not in hierarchy or not in the annotation volume

[drodarie]

Fix #60.
Regions dropped will be displayed with a warning.
Update README.rst

[mgeplf]

Thanks!
I've asked @lecriste to try this, and see if it fixes the issue.
If it works, I can have a look at fixing the tests.

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

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Additional details and impacted files

@@           Coverage Diff           @@
##             main      #61   +/-   ##
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  Coverage        ?   97.78%           
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  Files           ?       22           
  Lines           ?     1447           
  Branches        ?        0           
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  Hits            ?     1415           
  Misses          ?       32           
  Partials        ?        0           

Flag	Coverage Δ
pytest	97.78% <0.00%> (?)

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[drodarie]

@mgeplf I solved the tests issues. It was linked to the root region parameter. The code should be ready to review now.

[mgeplf]

Great; thanks - I'll wait to merge it until we see if it fixes the atlas issue.

[mgeplf]

The pipeline was run, as reported: #60 (comment)

Thus, I will merge this.

[mgeplf]

Thanks @drodarie; very appreciated.