Chore: Change license from GPLv3 to Apache-v2 (#106)

* Chore: Change license from GPLv3 to Apache-v2

* Chore: Use SPDX identifier in file headers

* Chore: Lint

* Chore: Update copyright dates

.copier-answers.yml

@@ -1,10 +1,10 @@
 # Changes here will be overwritten by Copier
 
-_commit: 0.1.54
+_commit: 0.1.57
 _src_path: git@bbpgitlab.epfl.ch:neuromath/python-template.git
 author_email: ''
 author_name: Blue Brain Project, EPFL
-copyright_license: GNU General Public License v3.0
+copyright_license: Apache License 2.0
 copyright_year: '2022'
 distribution_name: NeuroTS
 download_url: https://github.com/BlueBrain/NeuroTS

.github/workflows/commitlint.yml

@@ -12,7 +12,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: actions/setup-node@v4
         with:
-          node-version: '16'
+          node-version: '20'
       - run: npm install -g --force commitlint @commitlint/cli commitlint-plugin-cleanfeet
       - run: npm install conventional-changelog-conventionalcommits
       - run: touch .git/COMMIT_EDITMSG

examples/extract_synthesis_inputs.py

@@ -1,19 +1,8 @@
 # noqa
 
-# Copyright (C) 2022  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 """
 Extract inputs for synthesis

examples/synthesize_neuron_external_diameter.py

@@ -1,19 +1,8 @@
 # noqa
 
-# Copyright (C) 2022  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 """
 Synthesize a cell with external diametrizer

examples/synthesize_neuron_with_diameters.py

@@ -1,19 +1,8 @@
 # noqa
 
-# Copyright (C) 2022  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 """
 Synthesize neuron with a simple diameter model

examples/synthesize_neurons.py

@@ -1,19 +1,8 @@
 # noqa
 
-# Copyright (C) 2022  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 """
 Synthesize a population of neurons with the same parameters

examples/synthesize_single_neuron.py

@@ -1,19 +1,8 @@
 # noqa
 
-# Copyright (C) 2022  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 """
 Synthesize a single neuron

neurots/__init__.py

@@ -3,20 +3,9 @@
 Synthesis of artificial neurons using their topological profiles package.
 """
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import importlib.metadata
 

neurots/astrocyte/__init__.py

@@ -1,16 +1,5 @@
 """Module to generate astrocyte morphologies."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0

neurots/astrocyte/context.py

@@ -1,19 +1,8 @@
 """Space colonization context data structures."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 

neurots/astrocyte/grower.py

@@ -1,19 +1,8 @@
 """NeuroTS class: Grower object that contains the grower functionality."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 from copy import deepcopy

neurots/astrocyte/point_cloud.py

@@ -1,19 +1,8 @@
 """Point cloud class for synapses."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 

neurots/astrocyte/section.py

@@ -1,19 +1,8 @@
 """Astrocyte section growers."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 from collections import namedtuple

neurots/astrocyte/space_colonization.py

@@ -1,19 +1,8 @@
 """Basic class for TreeGrower Algorithms for space colonization."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 

neurots/astrocyte/tmd_utils.py

@@ -1,19 +1,8 @@
 """Barcode utils."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import logging
 

neurots/astrocyte/tree.py

@@ -1,19 +1,8 @@
 """NeuroTS class: Tree."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import copy
 

neurots/basic.py

@@ -1,19 +1,8 @@
 """A file to store general basic functionality needed in different modules."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import numpy as np
 

neurots/extract_input/__init__.py

@@ -1,19 +1,8 @@
 """Module to extract morphometrics and TMD-input from a set of tree-shaped cells."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 from neurots.extract_input.input_distributions import distributions  # noqa
 from neurots.extract_input.input_parameters import parameters  # noqa

neurots/extract_input/from_TMD.py

@@ -1,19 +1,8 @@
 """Extracts the distributions associated with TMD module."""
 
-# Copyright (C) 2021  Blue Brain Project, EPFL
+# Copyright (C) 2021-2024  Blue Brain Project, EPFL
 #
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+# SPDX-License-Identifier: Apache-2.0
 
 import tmd