Awesome Protein Representation Learning
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction"
pmUE (Protein Modelling Unreal Engine) - a repo for constructing a molecule visualizer plugin in Unreal
Large-Scale Computational Modeling of H5 Influenza Variants Against HA1-Neutralizing Antibodies
noodle-strut is an interactive 3D printing structural support module for PyMOL
Hybridized distance- and contact-based hierarchical protein folding
Designed for batch submission of multiple target sequences using a single structural template in SwissModel
Protein Structure Prediction Toolkit A Python-based tool to fetch, parse, and analyze protein 3D structures using PDB IDs. It downloads .pdb files from RCSB, extracts chain and residue information using BioPython, and sets the foundation for future integration with AlphaFold2 and structural analysis tools.
Structural Bioinformatics Course @UAM
Visualizing the 6KIX Histone Protein using PyMOL – includes annotated movie scenes.
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