Single Cell Multi-omics deep clustering
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Jul 1, 2025 - Python
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multiomics-data
Here are 12 public repositories matching this topic...
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data
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Mar 18, 2025 - HTML
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
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Oct 29, 2023 - Python
MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dominik Heider, and Georges Hattab
visualization machine-learning bioinformatics time-series cross-platform clustering web-app exploratory-data-analysis time-series-analysis multiomics multiomics-data
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May 17, 2022 - Python
Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation
transcription-factors protein-interaction network-regularization gene-expression-profiles transcriptional-regulatory-network single-cell-analysis ppi-networks network-lasso multiomics-data gene-regulatory-network-inference bioinformatics-software transcription-factor-coordination regularization-embeddings regression-embeddings predictor-interactions network-guided-regression regression-with-prior-knowledge network-based-inference netrem
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May 18, 2024 - Jupyter Notebook
MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard
genomics sequencing standards proteomics metabolomics mass-spectrometry lipidomics curation omics-data-integration multiomics-data
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Jul 8, 2025 - JavaScript
Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis
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May 1, 2023 - Python
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
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Oct 29, 2023 - Python
Analysis code, scripts, and data visualization from my Master's thesis focused on the multiomic integration (transcriptomics, lipidomics, spatial lipidomics) of monoglyceride responses in adipose tissue macrophages within the context of obesity.
bioinformatics rna-seq adipose-tissue transcriptomics lipidomics rna-seq-analysis lcms obesity rna-seq-pipeline macrophages multiomics-data spacial-lipidomics monoglycerides
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Jun 23, 2025
coxnnet v1 and v2 models updated to work with Python3.
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May 1, 2021 - Jupyter Notebook
Multi-omics integration method using AE and GCN
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Jun 7, 2023 - Python
Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.
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Feb 9, 2025 - Python
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