Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)

Genomic Identification of Significant Targets in Cancer

This is basic GenePattern module written in Python 3. It can be taken as a Template for future modules. (click 'Use this template' to get started)

GenePattern Hierarchical Clustering module.

UMap or TSNE validation plots

Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data

Module for GSEA Julia Implementation

Visualizes prediction results

This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.

Imports data from the Gene Expression Omnibus (GEO)

Salmon quantification wrapper module for GenePattern.

Salmon Alevin (single cell) quantification wrapper module for GenePattern.

This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file

Identify differentially expressed genes that can discriminate between distinct classes of samples.

HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'

Generate the signature subway and stream plots

GenePattern module wrapping igv.js

scVelo wrapper module for GenePattern