kaist-ina / BWA-MEME Star 121 Code Issues Pull requests BWA-MEME: Faster BWA-MEM2 using learned-index machine-learning bioinformatics genomics ngs bwa-mem alignment-algorithm learned-index bwa-mem2 short-read-mapping bwa-meme Updated Jul 1, 2024 C++
nf-core / hgtseq Star 25 Code Issues Pull requests A pipeline to investigate horizontal gene transfer from NGS data taxonomies workflow pipeline nextflow ngs tidyverse multiqc samtools bwa-mem horizontal-gene-transfer genomics-visualization fastqc nf-core krona kraken2 bwa-mem2 ggbio Updated Jun 3, 2025 Nextflow
hewillk / aligner Star 2 Code Issues Pull requests Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment. smith-waterman bwa sequence-alignment fm-index bwa-mem2 Updated Mar 24, 2021 C++
MPUSP / snakemake-simple-mapping Star 0 Code Issues Pull requests A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple. snakemake genomics mapping next-generation-sequencing variant-calling bowtie2 snakemake-workflow bwa-mem2 star-alignment Updated Jun 20, 2025 Python