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SPQB

Statistical Physics for Quantitative Biology

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adabmDCA adabmDCA Public

adabmDCA 2.0 – a flexible but easy-to-use package for Direct Coupling Analysis

8
arDCA arDCA Public

auto-regressive Direct Coupling Analysis (arDCA) 2.0

Python 1 1
Genie.jl Genie.jl Public

Genie. jl is designed for implementing and analyzing evolutionary trajectories in protein evolution. It incorporates a data-driven model to simulate the effects of mutations, epistasis, and selecti…

Julia

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Showing 7 of 7 repositories

adabmDCA.jl Public
Julia implementation of adabmDCA

spqb/adabmDCA.jl’s past year of commit activity

Julia 3 MIT 0 0 0 Updated Jul 4, 2025
adabmDCA Public
adabmDCA 2.0 – a flexible but easy-to-use package for Direct Coupling Analysis

spqb/adabmDCA’s past year of commit activity

8 MIT 0 0 0 Updated Jul 4, 2025
adabmDCApy Public
Pytorch implementation of adabmDCA

spqb/adabmDCApy’s past year of commit activity

Python 6 Apache-2.0 2 1 0 Updated Jul 4, 2025
arDCA Public
auto-regressive Direct Coupling Analysis (arDCA) 2.0

spqb/arDCA’s past year of commit activity

Python 1 Apache-2.0 1 0 0 Updated Mar 18, 2025
plmDCA Public
pseudo-likelihood Maximization Direct Coupling Analysis (plmDCA) 2.0

spqb/plmDCA’s past year of commit activity

Python 0 Apache-2.0 0 0 0 Updated Mar 5, 2025
adabmDCAc Public
C/C++ implementation of adabmDCA

spqb/adabmDCAc’s past year of commit activity

C++ 0 MIT 0 0 0 Updated Jan 31, 2025
Genie.jl Public
Genie. jl is designed for implementing and analyzing evolutionary trajectories in protein evolution. It incorporates a data-driven model to simulate the effects of mutations, epistasis, and selection across varying time scales, facilitating a deeper understanding of protein diversity and functionality.

spqb/Genie.jl’s past year of commit activity

Julia 0 MIT 0 0 0 Updated Jan 29, 2025

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