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1. CroCoDeEL CroCoDeEL Public

   CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

   Python 24

2. meteor meteor Public

   Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes)…

   Python 22

3. ESKRIM ESKRIM Public

   ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

   Python 5