Update testing instructions

.python-version

@@ -0,0 +1 @@
+3.9

JobRunner/SpecialRunner.py

@@ -182,7 +182,7 @@ def _readio(self, p, job_id, queues):
 
     def _wdl_run(self, stype, config, data, job_id, queues):
         """
-        This subbmits the job to the batch system and starts
+        This submits the job to the batch system and starts
         a thread to monitor the progress.
 
         """

README.md

@@ -69,13 +69,22 @@ export SDK_CALLBACK_URL=http://localhost:9999
 Here is a quick start guide for running test for the Job Runner code.
 See the SDK guide for information about running test of SDK apps.
 
+Note that the
+[cromwell-44.jar](https://github.com/broadinstitute/cromwell/releases/download/44/cromwell-44.jar)
+file must exist in your `$HOME` directory, as well as a `cromwell.conf` file, which can be
+empty. Java 8 is required to run Cromwell.
+
+Also note that there are `uv` `pyproject.toml` and `uv.lock` files provided for your
+comfort and convenience. They currently are not integrated into builds and must manually be kept
+in sync with the `requirements*.txt` files, but they can simplify running tests.
+
 ```
 pip install -r requirements.txt -r requirements-dev.txt
 
 # Set the DOCKER_HOST if this doesn't work out of the box
 export DOCKER_HOST=unix://$HOME/.docker/run/docker.sock
 
-# Be sure to set both tokens and the KB_BASE_URL
+# Be sure to set both tokens and the KB_BASE_URL. Other variables are optional.
 export KB_AUTH_TOKEN="xxxxxxxxx"
 export KB_ADMIN_AUTH_TOKEN="xxxxxxxxxxxx"
 export KB_BASE_URL=https://ci.kbase.us/services

pyproject.toml

@@ -0,0 +1,22 @@
+[project]
+name = "jobrunner"
+version = "0.0.2"
+description = "The EE2 JobRunner for kB_SDK apps."
+readme = "README.md"
+requires-python = ">=3.9"
+dependencies = [
+    "docker==7.0.0",
+    "requests==2.31.0",
+    "sanic==21.12.2",
+    "uvloop==0.19.0",
+    "websocket-client==1.7.0",
+    "websockets==10.0",
+]
+
+[dependency-groups]
+dev = [
+    "aiohttp==3.9.1",
+    "nose==1.3.7",
+    "nose-cov>=1.6",
+    "sanic-testing==0.8.3",
+]

test/test_specialrunner.py

@@ -109,5 +109,10 @@ def test_run_wdl(self):
         for line in output:
             if line["line"].find("workflow finished with status 'Succeeded'") > 0:
                 count += 1
+        if not count:
+            print("\n\ntest_run_wdl logs:")
+            for line in output:
+                print(line["line"])
+            print()
         self.assertTrue(count)
         self.assertLess(self.logger.ct, 10)