Code and Manuscript Files for "Automatic Differentiation Accelerates Inference for Partially-Observed Markov Processes

Thank you for reviewing the code submitted with the manuscript. The LaTeX source files for the manuscript are included in the paper/ directory. The source code for the simulations are contained in filtering.py, optim.py, pomps.py, and resampling.py, along with the three driver Jupyter notebooks used for generating the results in cholera.ipynb, cholera_biasvar.ipynb, and cholera_npeb.ipynb.

Please contact the authors if you have any further questions.