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add GEH changes for final submission #5

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f259010
final edits
gracehallenb Oct 27, 2020
aa2819f
corr stats
gracehallenb Oct 28, 2020
d29fd7b
figure 1 and perm testing edits
gracehallenb Oct 29, 2020
7c7e2bc
perm testing update
gracehallenb Oct 29, 2020
a94c5e8
figures1-7, supp1-5
gracehallenb Nov 16, 2020
56902bb
test
gracehallenb Nov 17, 2020
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Binary file added ._spDist_neural_behav_corr_exclutri_individperm_noflipth_fig5.m*
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27 changes: 9 additions & 18 deletions spDist_channelRespAmp_GAT_Figure4.m → spDist_channelRespAmp_GAT_suppFigure5.m
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
%
% TCS 8/19/2019
%
function spDist_channelRespAmp_GATdist_gh_082520(subj,sess,ROIs,which_vox)
function spDist_channelRespAmp_GAT_suppFigure5(subj,sess,ROIs,which_vox)

tst_dir = 'spDist';

Expand All @@ -17,20 +17,18 @@ function spDist_channelRespAmp_GATdist_gh_082520(subj,sess,ROIs,which_vox)
%root = spDist_loadRoot;

if nargin < 1
% subj = {'CC','MR','AY'}

subj = {'AY','CC','EK','KD','MR','SF','XL'};

end
if nargin < 2
sess = {{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'}};
% sess = {{'spDistLong1','spDistLong2'},{'spDistLong1','spDistLong2'},{'spDistLong1','spDistLong2'}};
% sess = {{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'}};

end

if nargin < 3
ROIs = {'V1','V2','V3','V3AB','hV4','VO1','VO2','LO1','LO2','TO1','TO2','IPS0','IPS1','IPS2','IPS3','sPCS','iPCS'};

%ROIs = {'V1','V2','V3','V3AB','hV4','VO1','VO2','LO1','LO2','TO1','TO2','IPS0','IPS1','IPS2','IPS3','sPCS','iPCS'}; %change this back 111220
ROIs = {'V1V2V3','V3AB','hV4','LO1','IPS0IPS1','IPS2IPS3','sPCS'};
end


Expand Down Expand Up @@ -75,12 +73,8 @@ function spDist_channelRespAmp_GATdist_gh_082520(subj,sess,ROIs,which_vox)

end

%delay_tpt_range = [1.5 3; 7 9; 15 16.5];
delay_tpt_range = [3.75 5.25; 8 9.5; 10.5 12]; % updated to parallel new fig 4, aug 25 2020
% delay_tpt_range = [1.5 3; 6 7.5; 10 12]; for use in spDist orig

% delay_tpt_range = [1.5 6.5; 6.5 11.5; 11.5 16.5];
% delay_tpt_range = [1.5 4;4 6.5;6.5 9;9 11.5;11.5 14; 14 16.5];

delay_tpt_range = [3.75 5.25; 8.25 9.75; 10.5 12];
delay_tpts_tmp = cell(size(delay_tpt_range,1),1);

for dd = 1:size(delay_tpt_range,1)
Expand Down Expand Up @@ -146,10 +140,7 @@ function spDist_channelRespAmp_GATdist_gh_082520(subj,sess,ROIs,which_vox)
for fold_idx = 1:n_folds

% ~~~~~~~ first, estimate IEM ~~~~~~~~~~





% pick CV sets
trn_runs = ones(length(unique(data.r_LORO)),1);

Expand Down Expand Up @@ -330,9 +321,9 @@ function spDist_channelRespAmp_GATdist_gh_082520(subj,sess,ROIs,which_vox)
% save with VE marker when which_vox < 1, otherwise, number of
% vox
if which_vox < 1
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_VE%03.f_GATdist_fig4TPTS.mat',root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan,100*which_vox);
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_VE%03.f_GATdist_fig5TPTS.mat',root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan,100*which_vox);
else
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_%ivox_GATdist_fig4TPTS.mat' ,root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan, which_vox);
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_%ivox_GATdist_fig5TPTS.mat' ,root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan, which_vox);
end
fprintf('saving to %s...\n',fn2s);

Expand Down
13 changes: 6 additions & 7 deletions spDist_channelRespAmp_GATdist.m
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Original file line number Diff line number Diff line change
Expand Up @@ -16,17 +16,16 @@ function spDist_channelRespAmp_GATdist(subj,sess,ROIs,which_vox)
%root = spDist_loadRoot;

if nargin < 1
subj = {'CC'};
subj = {'AY','CC','EK','KD','MR','SF','XL'};

end
if nargin < 2
sess = {{'spDist1','spDist2'}};

sess = {{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'}};
end

if nargin < 3
ROIs = {'V1','V2','V3','V3AB','hV4','VO1','VO2','LO1','LO2','TO1','TO2','IPS0','IPS1','IPS2','IPS3','sPCS','iPCS'};

% ROIs = {'V1','V2','V3','V3AB','hV4','VO1','VO2','LO1','LO2','TO1','TO2','IPS0','IPS1','IPS2','IPS3','sPCS','iPCS'};
ROIs = {'V1V2V3','V3AB','hV4','LO1','IPS0IPS1','IPS2IPS3','sPCS'};
end


Expand Down Expand Up @@ -301,9 +300,9 @@ function spDist_channelRespAmp_GATdist(subj,sess,ROIs,which_vox)
% save with VE marker when which_vox < 1, otherwise, number of
% vox
if which_vox < 1
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_VE%03.f_GATdist.mat',root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan,100*which_vox);
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_VE%03.f_GATdist_fig5.mat',root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan,100*which_vox);
else
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_%ivox_GATdist.mat' ,root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan, which_vox);
fn2s = sprintf('%s/%s_reconstructions/%s_%s_%s_%s_%ichan_%ivox_GATdist_fig5.mat' ,root,tst_dir,subj{ss},horzcat(sess{ss}{:}),ROIs{vv},func_suffix,n_chan, which_vox);
end
fprintf('saving to %s...\n',fn2s);

Expand Down
5 changes: 3 additions & 2 deletions spDist_fidelity_stats_shuf.m
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Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@
sess = {{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'},{'spDist1','spDist2'}};

ROIs = {'V1','V2','V3','V3AB','hV4','LO1','IPS0','IPS1','IPS2','IPS3','sPCS'};
% ROIs = {'V1V2V3','V3AB','hV4','LO1','IPS0IPS1','IPS2IPS3','sPCS'};
func_suffix = 'surf';

cat_mode = 1; % if 1, look for catSess1Ses...SessN_ files, otherwise, just look for each session in turn
Expand Down Expand Up @@ -422,9 +423,9 @@

myy = match_ylim(get(gcf,'Children'));
set(mh(:),'YData',[min(myy(:,1)) max(myy(:,2))]);

set(gcf,'Position',[109 372 989 168]); %for concat ROIs
set(gcf,'Position',[185 745 1843 470]);

set(gcf,'Position',[109 372 1843 470]);

% NOTE: other aspects of plotting from MGSMap_fidelity_stats_shuf.m were
% not edited, so can be copied/pasted from that file if desired
Expand Down
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