tgr-fun

Soil fungi response to tallgrass prairie restoration in Illinois and Wisconsin

Contents

• Sequence Data describes procedures to extract, transform, and load the raw OTU data.
  • Raw Sequence Data are housed in a separate directory.
  • After ETL, Clean Data are housed in a separate directory.
• Fungal Ecology comprises analyses of alpha and beta diversity, correlations with plant abundance, and constrained analysis of explanatory variables.
• Edaphic describes soil chemical properties and displays differences among sites.
• Custom Functions are housed separately to save space in other scripts.
• Raw Code is housed in a separate directory to reduce root directory clutter.
• The Resources folder contains the style sheet for figures, sidecar figure files used by GitHub, and the Render Reports script that handles report rendering and file path housekeeping to keep the root directory clutter-free.