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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 170 164

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    Python 125 70

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 81 34

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 29 42

  6. primalscheme3 primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    HTML 16 6

Repositories

Showing 10 of 40 repositories
  • primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    artic-network/primalscheme3’s past year of commit activity
    HTML 16 GPL-3.0 6 4 0 Updated Jul 16, 2025
  • amplicon-nf Public
    artic-network/amplicon-nf’s past year of commit activity
    Nextflow 3 MIT 0 1 0 Updated Jul 16, 2025
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 125 MIT 89 7 0 Updated Jul 15, 2025
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 8 GPL-3.0 4 6 0 Updated Jul 2, 2025
  • prepare-nf Public

    Generate a run sample sheet to input to amplicon-nf

    artic-network/prepare-nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jul 1, 2025
  • artic-doc Public
    artic-network/artic-doc’s past year of commit activity
    HTML 1 0 0 0 Updated Jun 27, 2025
  • squirrel-nf Public

    Interactive workflow to run squirrel

    artic-network/squirrel-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Jun 26, 2025
  • website Public
    artic-network/website’s past year of commit activity
    HTML 3 6 0 1 Updated Jun 26, 2025
  • artic-mpxv-nf Public Forked from epi2me-labs/wf-artic

    ARTIC Epi2me compatible workflow and reporting

    artic-network/artic-mpxv-nf’s past year of commit activity
    Nextflow 3 37 1 1 Updated Jun 23, 2025
  • civet Public

    Cluster Investigation & Virus Epidemiology Tool

    artic-network/civet’s past year of commit activity
    Python 50 GPL-3.0 14 32 0 Updated Jun 17, 2025
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