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Score set summary statistics view (#35) #257

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127 changes: 127 additions & 0 deletions src/components/ScoreSetStatistics.vue
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Original file line number Diff line number Diff line change
@@ -0,0 +1,127 @@
<template>
<div class="mave-statistics">
<div v-if="scoreSet.numVariants" class="mave-statistics-group">
<div class="mave-statistic">
<label>Total number of variants:</label>
{{ formatCount(scoreSet.numVariants) }}
</div>
</div>
<div v-if="scoreSet.statistics?.targetLength" class="mave-statistics-group">
<div class="mave-statistic">
<label>Target length:</label>
<label class="mave-statistic-sublabel">DNA</label>
{{ formatCount(scoreSet.statistics.targetLength.dna) }}
<label class="mave-statistic-sublabel">Protein</label>
{{ formatCount(scoreSet.statistics.targetLength.protein) }}
</div>
</div>
<div v-if="scoreSet.statistics?.meanNumMutationsPerPosition?.dna || scoreSet.statistics?.meanNumMutationsPerPosition?.protein" class="mave-statistics-group">
<div class="mave-statistic">
<label>Avg. # mutations per position:</label>
<span v-if="scoreSet.statistics.meanNumMutationsPerPosition.dna">
<label class="mave-statistic-sublabel">DNA</label>
{{ formatFloat(scoreSet.statistics.meanNumMutationsPerPosition.dna) }}
</span>
<span v-if="scoreSet.statistics.meanNumMutationsPerPosition.protein">
<label class="mave-statistic-sublabel">Protein</label>
{{ formatFloat(scoreSet.statistics.meanNumMutationsPerPosition.protein) }}
</span>
</div>
</div>
<div v-if="scoreSet.statistics?.numSpliceVariants != null && scoreSet.statistics?.numSpliceVariants > 0" class="mave-statistics-group">
<div class="mave-statistic">
<label># splice variants:</label>
{{ formatCount(scoreSet.statistics.numSpliceVariants) }}
</div>
</div>
<div v-if="scoreSet.statistics?.numVariantsByMutationCount?.pro" class="mave-statistics-group">
<div class="mave-statistic">
<label>Variants by number of protein sequence mutations:</label>
<label class="mave-statistic-sublabel">Single</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.pro.single) }}
<label class="mave-statistic-sublabel">Double</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.pro.double) }}
<label class="mave-statistic-sublabel">Triple+</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.pro.tripleOrMore) }}
</div>
</div>
<div v-if="scoreSet.statistics?.numVariantsByMutationCount?.nt" class="mave-statistics-group">
<div class="mave-statistic">
<label>Variants by number of NT sequence mutations:</label>
<label class="mave-statistic-sublabel">Single</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.nt.single) }}
<label class="mave-statistic-sublabel">Double</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.nt.double) }}
<label class="mave-statistic-sublabel">Triple+</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationCount.nt.tripleOrMore) }}
</div>
</div>
<div v-if="scoreSet.statistics?.numVariantsByMutationType" class="mave-statistics-group">
<div class="mave-statistic">
<label>Variants by type:</label>
<label class="mave-statistic-sublabel">Nonsense</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationType.nonsense) }}
<label class="mave-statistic-sublabel">Missense</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationType.missense) }}
<label class="mave-statistic-sublabel">Synonymous</label>
{{ formatCount(scoreSet.statistics.numVariantsByMutationType.synonymous) }}
</div>
</div>
</div>
</template>

<script>

export default {
name: 'ScoreSetStatistics',

props: {
scoreSet: {
type: Object,
required: true
}
},

methods: {
formatCount: (n) => n == null ? '' : n.toLocaleString(),
formatFloat: (x) => x == null ? '' : x.toFixed(2)
}
}

</script>

<style scoped>

.mave-statistics {
margin: 1em 0;
}

.mave-statistics-group {
clear: both;
}

.mave-statistic {
clear: both;
}

.mave-statistic::after {
content: "";
clear: both;
display: table;
}

.mave-statistic label {
padding: 0 0.5em 0 0;
}

.mave-statistic label.mave-statistic-sublabel {
float: none;
background-color: #666;
color: #fff;
padding: 0 4px;
border-radius: 3px;
margin-left: 1em;
font-weight: normal;
}

</style>
24 changes: 22 additions & 2 deletions src/components/screens/ScoreSetView.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -121,6 +121,7 @@
</template>
<Button class="p-button-outlined p-button-sm" @click="downloadMappedVariants()">Mapped Variants</Button>&nbsp;
</div>
<ScoreSetStatistics :score-set="item" />
<div v-if="requestFromGalaxy == '1'"><br>Send files to <a :href="`${this.galaxyUrl}`">Galaxy</a> <Button class="p-button-outlined p-button-sm" @click="sendToGalaxy('scores')">Scores</Button>&nbsp;
<template v-if="countColumns.length != 0">
<Button class="p-button-outlined p-button-sm" @click="sendToGalaxy('counts')">Counts</Button>&nbsp;
Expand Down Expand Up @@ -340,11 +341,11 @@ import DataTable from 'primevue/datatable'
import TabPanel from 'primevue/tabpanel'
import TabView from 'primevue/tabview'
import Message from 'primevue/message'
import ProgressSpinner from 'primevue/progressspinner'
import ScrollPanel from 'primevue/scrollpanel';

import ScoreSetHeatmap from '@/components/ScoreSetHeatmap'
import ScoreSetHistogram from '@/components/ScoreSetHistogram'
import ScoreSetStatistics from '@/components/ScoreSetStatistics'
import EntityLink from '@/components/common/EntityLink'
import PageLoading from '@/components/common/PageLoading'
import ItemNotFound from '@/components/common/ItemNotFound'
Expand All @@ -362,7 +363,26 @@ import items from '@/composition/items'

export default {
name: 'ScoreSetView',
components: { Accordion, AccordionTab, AutoComplete, Button, Chip, DefaultLayout, EntityLink, ScoreSetHeatmap, ScoreSetHistogram, TabView, TabPanel, Message, DataTable, Column, ProgressSpinner, ScrollPanel, PageLoading, ItemNotFound },
components: {
Accordion,
AccordionTab,
AutoComplete,
Button,
Chip,
Column,
DataTable,
DefaultLayout,
EntityLink,
ItemNotFound,
Message,
PageLoading,
ScoreSetHeatmap,
ScoreSetHistogram,
ScoreSetStatistics,
ScrollPanel,
TabPanel,
TabView
},
computed: {
isMetaDataEmpty: function() {
//If extraMetadata is empty, return value will be true.
Expand Down