Scripts should be installed on compute server, which will be called via RPC (remote procedure call). See https://github.com/USArhythms/pipeline for file transfer and trigger for RPC.
This is work in progress. If you have additional scripts that may be useful in processing (automatic calculations, file transfer, etc), and wish to share with U19 consortium, please contact: drinehart@ucsd.edu.
Note: This script requires a 'settings' folder with 2 files containing settings: dlc_setting.py (parameters for DeepLabCut) and settings.py (parameters for acquisition computers) N.B. Script also requires installation of DeepLabCut for analysis
This script requires passed arguments from post-acquire.sh. See main collection file, run_post_acquisition.py, for complete list of required and optional arguments.
- Compilation of movies from image sequence
- Extraction of side videos (left, right) and analysis of perspectives
[Issue Tracker] (https://github.com/USArhythms/pipeline-behavior/issues)
[Source Code] (https://github.com/USArhythms/pipeline-behavior)
If you are having issues or questions; or have code to contribute, please let me know. Duane Rinehart drinehart[at]ucsd.edu
The project is licensed under the MIT license.
Last update: 3-DEC-2024