STARCall: STitching Alignment and Read Calling for in-situ sequencing experiments

A python package for the processing and analysis of in situ sequencing experiments.

A full snakemake workflow using this package is available at https://github.com/FowlerLab/starcall-workflow.git

Full reference documentation is available at https://fowlerlab.github.io/starcall-docs/starcall.html