{2023.06}[2023a,a64fx] apps originally built with EB 4.9.2 #1091

trz42 · 2025-05-27T08:07:04Z

Includes all apps in this batch. Build time on NVIDIA Grace was ~ 16 hours. Might need to split this up and limit build parallelism for some packages.

Full list of 83 apps:

amdahl/0.3.1-gompi-2023a
BCFtools/1.18-GCC-12.3.0
BioPerl/1.7.8-GCCcore-12.3.0
BWA/0.7.18-GCCcore-12.3.0
CapnProto/1.0.1-GCCcore-12.3.0
Cartopy/0.22.0-foss-2023a
colorize/0.7.7-GCC-12.3.0
CP2K/2023.1-foss-2023a
crb-blast/0.6.9-GCC-12.3.0
Critic2/1.2-foss-2023a
DB/18.1.40-GCCcore-12.3.0
DB_File/1.859-GCCcore-12.3.0
DendroPy/4.6.1-GCCcore-12.3.0
f90wrap/0.2.13-foss-2023a
fastp/0.23.4-GCC-12.3.0
Fiona/1.9.5-foss-2023a
FragGeneScan/1.31-GCCcore-12.3.0
geopandas/0.14.2-foss-2023a
groff/1.22.4-GCCcore-12.3.0
grpcio/1.57.0-GCCcore-12.3.0
gtk-doc/1.34.0-GCCcore-12.3.0
h5netcdf/1.2.0-foss-2023a
HDBSCAN/0.8.38.post1-foss-2023a
HMMER/3.4-gompi-2023a
HTSlib/1.18-GCC-12.3.0
IQ-TREE/2.3.5-gompi-2023a
ITSTool/2.0.7-GCCcore-12.3.0
jemalloc/5.3.0-GCCcore-12.3.0
Judy/1.0.5-GCCcore-12.3.0
KaHIP/3.16-gompi-2023a
KronaTools/2.8.1-GCCcore-12.3.0
libaio/0.3.113-GCCcore-12.3.0
libcint/5.4.0-gfbf-2023a
libgcrypt/1.10.3-GCCcore-12.3.0
libgpg-error/1.48-GCCcore-12.3.0
Libint/2.7.2-GCC-12.3.0-lmax-6-cp2k
librosa/0.10.1-foss-2023a
libvori/220621-GCCcore-12.3.0
libxml2-python/2.11.4-GCCcore-12.3.0
LLVM/14.0.6-GCCcore-12.3.0-llvmlite
LRBinner/0.1-foss-2023a
LSD2/2.4.1-GCCcore-12.3.0
LZO/2.10-GCCcore-12.3.0
MAFFT/7.520-GCC-12.3.0-with-extensions
mallard-ducktype/1.0.2-GCCcore-12.3.0
MariaDB/11.6.0-GCC-12.3.0
maturin/1.4.0-GCCcore-12.3.0-Rust-1.75.0
MBX/1.1.0-foss-2023a
Meson/1.3.1-GCCcore-12.3.0
meson-python/0.15.0-GCCcore-12.3.0
MetalWalls/21.06.1-foss-2023a
ncbi-vdb/3.0.10-gompi-2023a
netcdf4-python/1.6.4-foss-2023a
numba/0.58.1-foss-2023a
OpenFOAM/10-foss-2023a
OpenFOAM/11-foss-2023a
OpenFOAM/v2312-foss-2023a
orjson/3.9.15-GCCcore-12.3.0
Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0
psycopg2/2.9.9-GCCcore-12.3.0
Pygments/2.18.0-GCCcore-12.3.0
pyproj/3.6.0-GCCcore-12.3.0
python-xxhash/3.4.1-GCCcore-12.3.0
QuantumESPRESSO/7.3.1-foss-2023a
Raptor/2.0.16-GCCcore-12.3.0
Rasqal/0.9.33-GCCcore-12.3.0
Redland/1.0.17-GCC-12.3.0
Ruby/3.3.0-GCCcore-12.3.0
Rust/1.75.0-GCCcore-12.3.0
SciTools-Iris/3.9.0-foss-2023a
Seaborn/0.13.2-gfbf-2023a
Shapely/2.0.1-gfbf-2023a
SQLAlchemy/2.0.25-GCCcore-12.3.0
tqdm/4.66.1-GCCcore-12.3.0
Transrate/1.0.3-GCC-12.3.0
unixODBC/2.3.12-GCCcore-12.3.0
wradlib/2.0.3-foss-2023a
xarray/2023.9.0-gfbf-2023a
XML-LibXML/2.0209-GCCcore-12.3.0
xxHash/0.8.2-GCCcore-12.3.0
yell/2.2.2-GCC-12.3.0
yelp-tools/42.1-GCCcore-12.3.0
yelp-xsl/42.1-GCCcore-12.3.0

eessi-bot-deucalion · 2025-05-27T08:07:09Z

Instance eessi-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

NOTE, bot code wasn't updated on Deucalion, therefore it created this comment.

eessi-bot-toprichard · 2025-05-27T08:07:09Z

Instance rt-Grace-jr is configured to build for:

architectures: aarch64/nvidia/grace
repositories: eessi.io-2023.06-software

trz42 · 2025-05-27T08:15:58Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-toprichard · 2025-05-27T08:16:02Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-deucalion · 2025-05-27T08:16:07Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1091/437784

date	job status	comment
May 27 08:16:06 UTC 2025	submitted	job id `437784` awaits release by job manager
May 27 08:17:00 UTC 2025	released	job awaits launch by Slurm scheduler
May 27 08:18:04 UTC 2025	running	job `437784` is running
May 27 08:31:43 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-437784.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
May 27 08:31:43 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 580.081 timesteps/s (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.68 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.72 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8794.13 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8682.74 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-437784.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-05-27T12:28:33Z

Try again...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-05-27T12:28:42Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1091/437986

job has been restarted three times ... we shouldn't let the queueing system do that automatically as it might overwrite job output and limit our ability to debug issues

date	job status	comment
May 27 12:28:41 UTC 2025	submitted	job id `437986` awaits release by job manager
May 27 12:28:59 UTC 2025	released	job awaits launch by Slurm scheduler
May 27 12:30:01 UTC 2025	running	job `437986` is running
May 27 19:29:04 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job437986.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
May 27 19:29:04 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job437986.test` does not exist in job directory, or parsing it failed.

trz42 · 2025-05-27T19:32:07Z

Rerun with additional argument --no-requeue to prevent automatic restarts...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-05-27T19:32:15Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1091/438489

date	job status	comment
May 27 19:32:14 UTC 2025	submitted	job id `438489` awaits release by job manager
May 27 19:33:08 UTC 2025	released	job awaits launch by Slurm scheduler
May 27 19:34:11 UTC 2025	running	job `438489` is running
May 27 21:21:33 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job438489.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
May 27 21:21:33 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job438489.test` does not exist in job directory, or parsing it failed.

boegel · 2025-06-15T14:46:02Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-06-15T14:46:10Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.06/pr_1091/461123

date	job status	comment
Jun 15 14:46:09 UTC 2025	submitted	job id `461123` awaits release by job manager
Jun 15 14:46:34 UTC 2025	released	job awaits launch by Slurm scheduler
Jun 15 14:47:37 UTC 2025	running	job `461123` is running
Jun 15 16:40:18 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job461123.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Jun 15 16:40:18 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job461123.test` does not exist in job directory, or parsing it failed.

boegel · 2025-06-17T09:08:39Z

Looks like job 461123 failed prematurely for no good reason?
Last completed installation was MetalWalls/21.06.1-foss-2023a, maybe it got killed while trying to install QuantumESPRESSO-7.3.1-foss-2023a.eb?

boegel · 2025-06-17T09:08:48Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-06-17T09:08:57Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.06/pr_1091/463781

date	job status	comment
Jun 17 09:08:56 UTC 2025	submitted	job id `463781` awaits release by job manager
Jun 17 09:09:27 UTC 2025	released	job awaits launch by Slurm scheduler
Jun 17 09:13:23 UTC 2025	running	job `463781` is running
Jun 17 11:00:39 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job463781.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Jun 17 11:00:39 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job463781.test` does not exist in job directory, or parsing it failed.

trz42 · 2025-06-17T14:02:49Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-06-17T14:03:00Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.06/pr_1091/464151

date	job status	comment
Jun 17 14:02:58 UTC 2025	submitted	job id `464151` awaits release by job manager
Jun 17 14:03:35 UTC 2025	released	job awaits launch by Slurm scheduler
Jun 17 14:04:38 UTC 2025	running	job `464151` is running
Jun 17 18:23:02 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job464151.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Jun 17 18:23:02 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job464151.test` does not exist in job directory, or parsing it failed.

boegel · 2025-06-17T18:47:41Z

I think we need to change tactics a bit when building for A64FX, since by default there's less than 1GB per core on Deucalion A64FX partition:

use standard limit for A64FX: only use quarter of available cores + fix determining level of parallelism in a way compatible with EasyBuild 4.x and 5.x software-layer-scripts#17

boegel · 2025-06-20T10:17:58Z

Let's try this again now that EESSI/software-layer-scripts#17 is merged...

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

boegel · 2025-06-20T12:29:46Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot-deucalion · 2025-06-20T12:29:54Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.06/pr_1091/468821

date	job status	comment
Jun 20 12:29:53 UTC 2025	submitted	job id `468821` awaits release by job manager
Jun 20 12:30:06 UTC 2025	released	job awaits launch by Slurm scheduler
Jun 20 12:31:09 UTC 2025	running	job `468821` is running
Jun 20 14:31:09 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job468821.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Jun 20 14:31:09 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job468821.test` does not exist in job directory, or parsing it failed.

{2023.06}[2023a,a64fx] apps originally built with EB 4.9.2

8ffd3c3

trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels May 27, 2025

trz42 mentioned this pull request May 27, 2025

Notes on building the stack for Fujitsu A64FX #1024

Open

2 tasks

fix indentation in easystack file

384ff3d

Merge branch 'main' into 2023.06-a64fx-2023a-eb492-apps-1

d24866e

boegel changed the base branch from 2023.06-software.eessi.io to main June 15, 2025 14:45

{2023.06}[2023a,a64fx] apps originally built with EB 4.9.2 #1091

Are you sure you want to change the base?

{2023.06}[2023a,a64fx] apps originally built with EB 4.9.2 #1091

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