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@CellProfiler

CellProfiler

Software for quantitative analysis of biological images

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  1. CellProfiler CellProfiler Public

    An open-source application for biological image analysis

    Python 1k 397

  2. CellProfiler-plugins CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    Python 67 68

  3. CellProfiler-Analyst CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 156 74

  4. tutorials tutorials Public

    CellProfiler tutorial pipelines and images

    Jupyter Notebook 93 86

  5. examples examples Public

    Example CellProfiler pipelines.

    Makefile 15 14

Repositories

Showing 10 of 30 repositories
  • CellProfiler Public

    An open-source application for biological image analysis

    CellProfiler/CellProfiler’s past year of commit activity
    Python 1,000 397 313 21 Updated Jul 9, 2025
  • CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    CellProfiler/CellProfiler-plugins’s past year of commit activity
    Python 67 68 31 12 Updated Jul 7, 2025
  • python-bioformats Public

    Read and write life sciences file formats

    CellProfiler/python-bioformats’s past year of commit activity
    Python 140 48 72 5 Updated Jun 12, 2025
  • python-javabridge Public Forked from LeeKamentsky/python-javabridge

    Python wrapper for the Java Native Interface

    CellProfiler/python-javabridge’s past year of commit activity
    Python 22 64 12 2 Updated Jun 12, 2025
  • tutorials Public

    CellProfiler tutorial pipelines and images

    CellProfiler/tutorials’s past year of commit activity
    Jupyter Notebook 93 BSD-3-Clause 86 3 0 Updated May 7, 2025
  • centrosome Public

    An open source image processing library

    CellProfiler/centrosome’s past year of commit activity
    Python 19 37 30 1 Updated Mar 31, 2025
  • core Public

    Core classes and components used by CellProfiler

    CellProfiler/core’s past year of commit activity
    Python 6 24 0 0 Updated Nov 12, 2024
  • .github Public

    Default files are stored here, such as code of conduct

    CellProfiler/.github’s past year of commit activity
    0 0 0 0 Updated Oct 27, 2024
  • distribution Public

    Everything needed to build CellProfiler for your favorite environment.

    CellProfiler/distribution’s past year of commit activity
    Python 4 6 13 0 Updated Sep 26, 2024
  • CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    CellProfiler/CellProfiler-Analyst’s past year of commit activity
    Python 156 74 71 5 Updated Aug 15, 2024
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