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1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -14,3 +14,4 @@ site
.idea
src/pyoframe/_version.py
htmlcov/
.snakemake/
29 changes: 29 additions & 0 deletions .vscode/launch.json
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@@ -0,0 +1,29 @@
{
// Use IntelliSense to learn about possible attributes.
// Hover to view descriptions of existing attributes.
// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
"version": "0.2.0",
"configurations": [
{
"name": "Snakemake",
"type": "python",
"request": "launch",
"module": "snakemake",
"args": [
"--cores",
"all"
],
},
{
"name": "Python Debugger: Snakemake",
"type": "debugpy",
"request": "launch",
"module": "snakemake",
"args": [
"--cores",
"1",
"--debug"
]
}
]
}
2 changes: 2 additions & 0 deletions benchmarks/.gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
results/**
src/*/data/**
355 changes: 355 additions & 0 deletions benchmarks/Manifest.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,355 @@
# This file is machine-generated - editing it directly is not advised

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