This repository contains the code, data and figures provided aas Supplementary information for the GeomeTRe software publication.
data
├─ figures # Figures generated by the notebook
├─ geometre # Input / output files of GeomeTRe software
│ ├─ input_design.tsv # Designed proteins from ROSETTA paper (including unit annotations)
│ ├─ input_repeatsdb4_filtered.tsv # RepeatsDB annotated proteins (aftyer removing low quality structures)
│ ├─ output_design_geometre.csv
│ └─ output_repeatsdb4_geometre.csv
├─ repeatparam
│ └─ output_repeatparam.csv # Output of the RepeatParam software
├─ repeatsdb4_classification.json # RepeatsDB metadata (unit definitions and classification)
└─ repeatsdb4_designed.tsv # IDs of designed proteins in RepeatsDB