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I tried to follow the example of RSCORE with GSE81861, but with an error message with the "PlotSteinertree" function, when I checked the original code of the "PlotSteinertree" function, I discovered this mistake might have come from the "steinertree" function and the Error message with "Error in check_input(terminals = terminals, glist = glist) : Error: vertices names do not contain terminal names.
Other Warning message: In is.null(terminals) || is.na(terminals) : 'length(x) = 323 > 1' in coercion to 'logical(1) "
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
I tried to follow the example of RSCORE with GSE81861, but with an error message with the "PlotSteinertree" function, when I checked the original code of the "PlotSteinertree" function, I discovered this mistake might have come from the "steinertree" function and the Error message with "Error in check_input(terminals = terminals, glist = glist) : Error: vertices names do not contain terminal names.
Other Warning message: In is.null(terminals) || is.na(terminals) : 'length(x) = 323 > 1' in coercion to 'logical(1) "
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8
[2] LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] igraph_1.3.2 dplyr_1.0.9
[3] stxBrain.SeuratData_0.1.1 ssHippo.SeuratData_3.1.4
[5] pbmcsca.SeuratData_3.0.0 pbmc3k.SeuratData_3.1.4
[7] panc8.SeuratData_3.0.2 ifnb.SeuratData_3.1.0
[9] hcabm40k.SeuratData_3.0.0 bmcite.SeuratData_0.3.0
[11] SeuratData_0.2.2 RSCORE_0.1.0
[13] org.Hs.eg.db_3.15.0 AnnotationDbi_1.58.0
[15] IRanges_2.30.0 S4Vectors_0.34.0
[17] Biobase_2.56.0 BiocGenerics_0.42.0
[19] clusterProfiler_4.4.2 genesorteR_0.4.3
[21] Matrix_1.4-1 doMC_1.3.5
[23] iterators_1.0.14 doRNG_1.8.2
[25] rngtools_1.5.2 foreach_1.5.2
[27] network_1.17.2 coop_0.6-3
[29] propr_4.2.6 STRINGdb_2.8.4
[31] AUCell_1.18.1 sp_1.5-0
[33] SeuratObject_4.1.0 Seurat_4.1.1
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