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<h1 id="scientific-research-using--citing-the-european-galaxy-server">Scientific research using & citing the European Galaxy server</h1>
<p><br />
This is the list of scientific publications that cited the European Galaxy instance sorted by year.
Please help us to support this project with your <a href="/about">acknowledgement</a>.
<br /><br /></p>
<h2 class="bibliography">2024</h2>
<ol class="bibliography"><li><span id="abusaleh_genetic_2024">AbuSaleh,L. <i>et al.</i> (2024) Genetic Polymorphisms of Angiotensin-Converting Enzyme 1 (ACE1) and ACE2 Associated With Severe Acute Respiratory Syndrome COVID-19 in the Palestinian Population. <i>Cureus</i>, <b>16</b>.</span></li>
<li><span id="aguirre_pranzoni_biofoams_2024">Aguirre Pranzoni,C. <i>et al.</i> (2024) Biofoams with Untapped Enzymatic Potential Produced from Beer Bagasse by Indigenous Fungal Strains.</span></li>
<li><span id="akpinar_characterization_2024">Akpinar,Z. and Karaoglu,H. (2024) Characterization of a highly thermostable recombinant xylanase from <i>Anoxybacillu</i>s <i>ayderensis</i>. <i>Protein Expression and Purification</i>, <b>219</b>, 106478.</span></li>
<li><span id="alawi_private_2024">Alawi,M. <i>et al.</i> (2024) Private and well drinking water are reservoirs for antimicrobial resistant bacteria. <i>npj Antimicrobials and Resistance</i>, <b>2</b>, 1–16.</span></li>
<li><span id="albrecht_amplicon-based_2024">Albrecht,C. <i>et al.</i> (2024) Amplicon-Based Bisulfite Conversion-NGS DNA Methylation Analysis Protocol. In, Jeltsch,A. and Rots,M.G. (eds), <i>Epigenome Editing: Methods and Protocols</i>. Springer US, New York, NY, pp. 405–418.</span></li>
<li><span id="aljindan_phenomics_2024">AlJindan,R. <i>et al.</i> (2024) Phenomics and genomic features of <i>Enterococcus avium</i> IRMC1622a isolated from a clinical sample of hospitalized patient. <i>Journal of Infection and Public Health</i>.</span></li>
<li><span id="andriyanov_genomic_2024">Andriyanov,P.A. <i>et al.</i> (2024) Genomic analysis of multidrug-resistant Delftia tsuruhatensis isolated from raw bovine milk. <i>Frontiers in Microbiology</i>, <b>14</b>.</span></li>
<li><span id="arai_two_2024">Arai,H. <i>et al.</i> (2024) Two male-killing Wolbachia from Drosophila birauraia that are closely related but distinct in genome structure. <i>Royal Society Open Science</i>, <b>11</b>, 231502.</span></li>
<li><span id="aribisala_silico_2024">Aribisala,J.O. <i>et al.</i> (2024) In silico exploration of phenolics as modulators of penicillin binding protein (PBP) 2× of Streptococcus pneumoniae. <i>Scientific Reports</i>, <b>14</b>, 8788.</span></li>
<li><span id="arnold_unlocking_2024">Arnold,N.D. (2024) Unlocking a Potent Chitin Saccharification System in a Novel Bacterium Through Omics and Bioinformatics.</span></li>
<li><span id="bahrami_integrated_2024">Bahrami,B. <i>et al.</i> (2024) Integrated analysis of transcriptome and epigenome reveals ENSR00000272060 as a potential biomarker in gastric cancer. <i>Epigenomics</i>, <b>16</b>, 159–173.</span></li>
<li><span id="bastide_genome_2024">Bastide,H. <i>et al.</i> (2024) The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins. <i>Current Biology</i>.</span></li>
<li><span id="bawin_cuscuta_2024">Bawin,T. <i>et al.</i> (2024) Cuscuta campestris fine-tunes gene expression during haustoriogenesis as an adaptation to different hosts. <i>Plant Physiology</i>, <b>194</b>, 258–273.</span></li>
<li><span id="becker_correlation_2024">Becker,A.-L. <i>et al.</i> (2024) Correlation of Immunomodulatory Cytokines with Tumor Volume and Cerebrospinal Fluid in Vestibular Schwannoma Patients. <i>Cancers</i>, <b>16</b>, 3002.</span></li>
<li><span id="beerling_enhanced_2024">Beerling,D.J. <i>et al.</i> (2024) Enhanced weathering in the US Corn Belt delivers carbon removal with agronomic benefits. <i>Proceedings of the National Academy of Sciences</i>, <b>121</b>, e2319436121.</span></li>
<li><span id="berlanga_biodiversity_2024">Berlanga,M. <i>et al.</i> (2024) Biodiversity and poten al func onality of biofilmsediment biotope in La Muerte lagoon, Monegros desert, Spain. <i>Frontiers in Ecology and Evolution</i>, <b>12</b>.</span></li>
<li><span id="bianconi_characterization_2024">Bianconi,I. <i>et al.</i> (2024) Characterization of Verona Integron-Encoded Metallo-β-Lactamase-Type Carbapenemase-Producing Escherichia coli Isolates Collected over a 16-Year Period in Bolzano (Northern Italy). <i>Microbial Drug Resistance</i>, <b>30</b>, 91–100.</span></li>
<li><span id="bihani_metaproteomics_2024">Bihani,S. <i>et al.</i> (2024) Metaproteomics for Coinfections in the Upper Respiratory Tract: The Case of COVID-19. In, Salerno,C. (ed), <i>Metaproteomics: Methods and Protocols</i>. Springer US, New York, NY, pp. 165–185.</span></li>
<li><span id="bode_catecholamine_2024">Bode,C. <i>et al.</i> (2024) Catecholamine treatment induces reversible heart injury and cardiomyocyte gene expression. <i>Intensive Care Medicine Experimental</i>, <b>12</b>, 48.</span></li>
<li><span id="bode_dynamics_2024">Bode,C. <i>et al.</i> (2024) Dynamics of cardiomyocyte gene expression and reversibility of catecholamine-induced heart injury.</span></li>
<li><span id="boeckman_phage_2024">Boeckman,J. <i>et al.</i> (2024) Phage DNA Extraction, Genome Assembly, and Genome Closure. In, Tumban,E. (ed), <i>Bacteriophages: Methods and Protocols</i>, Methods in Molecular Biology. Springer US, New York, NY, pp. 125–144.</span></li>
<li><span id="boyer_pulsar_2024">Boyer,T. and Neronov,A. (2024) Pulsar timing array constraints on the cosmological magnetic field from quark confinement epoch.</span></li>
<li><span id="camacho-beltran_complete_2024">Camacho-Beltrán,E. <i>et al.</i> (2024) Complete genome sequence of the Microbacterium enclense bacteriophage phiMiGM15. <i>Microbiology Resource Announcements</i>, <b>0</b>, e00302–24.</span></li>
<li><span id="candeliere_genomic_2024">Candeliere,F. <i>et al.</i> (2024) Genomic and functional analysis of the mucinolytic species Clostridium celatum, Clostridium tertium, and Paraclostridium bifermentans. <i>Frontiers in Microbiology</i>, <b>15</b>.</span></li>
<li><span id="carval_pangeo_2024">Carval,T. <i>et al.</i> (2024) Pangeo environment in Galaxy Earth System supported by Fair-Ease Copernicus Meetings.</span></li>
<li><span id="castellana_pannonibacter_2024">Castellana,S. <i>et al.</i> (2024) Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients. <i>Microorganisms</i>, <b>12</b>, 799.</span></li>
<li><span id="ceylan_whole-genome_2024">Ceylan,F. <i>et al.</i> (2024) Whole-genome resequencing identifies exonic single-nucleotide variations in terpenoid biosynthesis genes of the medicinal and aromatic plant common sage (Salvia officinalis L.). <i>Genetic Resources and Crop Evolution</i>.</span></li>
<li><span id="chetverikov_molecular_2024">Chetverikov,P.E. <i>et al.</i> (2024) Molecular Phylogenetics and Light Microscopy Reveal “True” and “False” Calacarines and Novel Genital Structures in Gall Mites (Acariformes, Eriophyoidea). <i>Forests</i>, <b>15</b>, 329.</span></li>
<li><span id="choudalakis_repentools_2024">Choudalakis,M. <i>et al.</i> (2024) RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats. <i>Mobile DNA</i>, <b>15</b>, 6.</span></li>
<li><span id="cosenza-contreras_proteometabolomics_2024">Cosenza-Contreras,M. <i>et al.</i> (2024) Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism. <i>Neuro-Oncology</i>, <b>26</b>, 488–502.</span></li>
<li><span id="crespo_pcid2_2024">Crespo,R. <i>et al.</i> (2024) PCID2 dysregulates transcription and viral RNA processing to promote HIV-1 latency. <i>iScience</i>, <b>27</b>, 109152.</span></li>
<li><span id="croney_revealing_2024">Croney,K. (2024) Revealing Binding and Unbinding Pathways of Small Molecules and Peptides to Enzymes with Enhanced Sampling Methods. <i>WWU Graduate School Collection</i>.</span></li>
<li><span id="darino_identification_2024">Darino,M. <i>et al.</i> (2024) Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. <i>Fungal Biology and Biotechnology</i>, <b>11</b>, 2.</span></li>
<li><span id="de_azevedo_genomic_2024">Azevedo,B.L. de <i>et al.</i> (2024) The genomic and phylogenetic analysis of Marseillevirus cajuinensis raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization. <i>Journal of Virology</i>, <b>0</b>, e00513–24.</span></li>
<li><span id="de_souza_mitochondrial_2024">Souza,F.D. de <i>et al.</i> (2024) Mitochondrial genome of Hancornia speciosa gomes: intergenic regions containing retrotransposons and predicted genes. <i>Molecular Biology Reports</i>, <b>51</b>, 132.</span></li>
<li><span id="de_souza_seeds_2024">Souza,Y.P.A. de <i>et al.</i> (2024) The seeds of Plantago lanceolata comprise a stable core microbiome along a plant richness gradient. <i>Environmental Microbiome</i>, <b>19</b>, 11.</span></li>
<li><span id="dederichs_nonpreferential_2024">Dederichs,T.-S. <i>et al.</i> (2024) Nonpreferential but Detrimental Accumulation of Macrophages With Clonal Hematopoiesis-Driver Mutations in Cardiovascular Tissues—Brief Report. <i>Arteriosclerosis, Thrombosis, and Vascular Biology</i>, <b>44</b>, 690–697.</span></li>
<li><span id="dehghanian_zfp982_2024">Dehghanian,F. <i>et al.</i> (2024) ZFP982 confers mouse embryonic stem cell characteristics by regulating expression of <i>Nanog</i>, <i>Zfp42</i><i>,</i> and <i>Dppa3</i>. <i>Biochimica et Biophysica Acta (BBA) - Molecular Cell Research</i>, <b>1871</b>, 119686.</span></li>
<li><span id="delandre_long-read_2024">Delandre,O. <i>et al.</i> (2024) Long-Read Sequencing and De Novo Genome Assembly Pipeline of Two Plasmodium falciparum Clones (Pf3D7, PfW2) Using Only the PromethION Sequencer from Oxford Nanopore Technologies without Whole-Genome Amplification. <i>Biology</i>, <b>13</b>, 89.</span></li>
<li><span id="deng_atlas_2024">Deng,L. <i>et al.</i> (2024) Atlas of cardiac endothelial cell enhancer elements linking the mineralocorticoid receptor to pathological gene expression. <i>Science Advances</i>, <b>10</b>, eadj5101.</span></li>
<li><span id="deng_massively_2024">Deng,L. <i>et al.</i> (2024) Massively parallel CRISPR-assisted homologous recombination enables saturation editing of full-length endogenous genes in yeast. <i>Science Advances</i>, <b>10</b>, eadj9382.</span></li>
<li><span id="depari_long-read_2024">Depari,E.K. <i>et al.</i> (2024) Long-read datasets of Kayu Bawang (<i>Azadirachta excelsa</i> (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships.</span></li>
<li><span id="donatova_changes_2024">Donátová,K. <i>et al.</i> (2024) Changes in the Expression of Proteins Associated with Neurodegeneration in the Brains of Mice after Infection with Influenza A Virus with Wild Type and Truncated NS1. <i>International Journal of Molecular Sciences</i>, <b>25</b>, 2460.</span></li>
<li><span id="dossmann_specific_2024">Dossmann,L. <i>et al.</i> (2024) Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons. <i>Communications Biology</i>, <b>7</b>, 1–12.</span></li>
<li><span id="edet_genomic_2024">Edet,O.U. <i>et al.</i> (2024) Genomic analysis of a spontaneous unifoliate mutant reveals gene candidates associated with compound leaf development in Vigna unguiculata [L] Walp. <i>Scientific Reports</i>, <b>14</b>, 10654.</span></li>
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<h2 class="bibliography">2020</h2>
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<h2 class="bibliography">2019</h2>
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<li><span id="senapathi_biomolecular_2019">Senapathi,T. <i>et al.</i> (2019) Biomolecular Reaction & Interaction Dynamics Global Environment (BRIDGE). <i>Bioinformatics</i>.</span></li>
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<li><span id="szachniuk_rnapolis:_2019">Szachniuk,M. (2019) RNApolis: Computational Platform for RNA Structure Analysis. <i>Foundations of Computing and Decision Sciences</i>, <b>44</b>, 241–257.</span></li>
<li><span id="tari_u2af65_2019">Tari,M. <i>et al.</i> (2019) U2AF65 assemblies drive sequence-specific splice site recognition. <i>EMBO reports</i>, <b>20</b>, e47604.</span></li>
<li><span id="teikari_insight_2019">Teikari,J.E. <i>et al.</i> (2019) Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315. <i>Scientific Reports</i>, <b>9</b>, 4888.</span></li>
<li><span id="torres-paz_maternally_2019">Torres-Paz,J. <i>et al.</i> (2019) Maternally regulated gastrulation as a source of variation contributing to cavefish forebrain evolution. <i>eLife</i>, <b>8</b>, e50160.</span></li>
<li><span id="wibberg_nbi_2019">Wibberg,D. <i>et al.</i> (2019) The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. <i>F1000Research</i>, <b>8</b>, 1877.</span></li>
<li><span id="wirth_characterization_2019">Wirth,R. <i>et al.</i> (2019) Characterization of Core Microbiomes and Functional Profiles of Mesophilic Anaerobic Digesters Fed With Chlorella vulgaris Green Microalgae and Maize Silage. <i>Frontiers in Energy Research</i>, <b>7</b>.</span></li>
<li><span id="wolfien_workflow_2019">Wolfien,M. <i>et al.</i> (2019) Workflow Development for the Functional Characterization of ncRNAs. In, Lai,X. <i>et al.</i> (eds), <i>Computational Biology of Non-Coding RNA: Methods and Protocols</i>, Methods in Molecular Biology. Springer New York, New York, NY, pp. 111–132.</span></li>
<li><span id="wylie_whole-genome_2019">Wylie,K.M. <i>et al.</i> (2019) Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection. <i>Frontiers in Cellular and Infection Microbiology</i>, <b>9</b>.</span></li>
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<h2 class="bibliography">2018</h2>
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