viral-genomics
Here are 32 public repositories matching this topic...
A reference guided assembler of highly variable viral genomes
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Mar 12, 2019 - Java
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
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Nov 17, 2019 - Jupyter Notebook
Hunting for CMV and HHV-6 in cfDNA sequence
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Jan 28, 2020 - R
Assembly and intrahost / low-frequency variant calling for viral samples
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Feb 12, 2020 - Nextflow
Human RNA virus genotyping
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Feb 28, 2020 - Java
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
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Jul 22, 2020 - Jupyter Notebook
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
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Nov 21, 2020 - Java
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
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May 12, 2021 - Python
a set of tools for viral amplicon schemes
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Aug 17, 2021 - C++
Detect Hepatitis A Virus Infection Clusters
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Sep 13, 2021 - Python
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
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Sep 22, 2022 - C++
Viral genome assembly pipeline for WGS using ONT
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Oct 22, 2022 - Shell
Data portal and API for Center for Viral Systems Biology (CViSB) data
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Jan 13, 2023 - TypeScript
Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
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Jan 26, 2023 - R
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
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Jun 28, 2023 - Python
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
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Aug 1, 2023 - Python
Viral genome assemble and characterisation
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Oct 17, 2023 - Python
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