From taxonomic affiliations to annotated proteins using UniProt database.
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Updated
Oct 4, 2024 - Python
From taxonomic affiliations to annotated proteins using UniProt database.
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
Efficient querying of biological databases
MOLeculAR structure annoTator
UniProt Id Mapping through API
BBS Project developed by Ronald Pardo, Ana Sofia Villa and Gabriela Moreno for the course of EBI tools @ Universidad de los Andes 2024-02.
This UniProt Protein Parser is a tool that parses data from an input file containing multiple UniProt records and generates an output `.txt` file, which contains useful information for each protein including their IDs, amino acid sequences and transmembrane segment positions.
🧬 Seja bem-vindo ao Repositório de Algoritmos em Bioinformática! Aqui você encontrará materiais e exercícios do curso ministrado no 1º semestre de 2024 na UNIFESP (Universidade Federal de São Paulo).
Robust and replicable information system for exploring protein metamorphisms.
The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.
Alpha Missense Scores provides precomputed JSON files with AlphaMissense pathogenicity scores for protein variants. Derived from DeepMind's TSV dataset, these JSON files are can be accessed via HTTP queries. This repository allows efficient data retrieval, bypassing the need for local processing of the original TSV files.
Using UniProt API, find all PDBs associated to the UniProt entry.
Comprehensive Python client for the Uniprot REST API
A Ruby on Rails application for proteomics data analysis
PINT is a new comprehensive web-based system to store, visualize, and query experimental proteomics data obtained under different experimental conditions and projects. PINT provides a very powerful query system through the use of different proteomics-specific data query commands running over both the experimental features and external annotation…
Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
Add a description, image, and links to the uniprot topic page so that developers can more easily learn about it.
To associate your repository with the uniprot topic, visit your repo's landing page and select "manage topics."