Fulgor is a fast and space-efficient colored de Bruijn graph index.
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Updated
Aug 22, 2024 - C++
Fulgor is a fast and space-efficient colored de Bruijn graph index.
Core library of the Genome Analysis Toolbox with de-Bruijn graph
GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
Probabilistic genome assembler based on de Bruijn Graph and profile HMM
Data Analysis for Genomics, De Bruijn Graph Chain Merging Compacting.
Data Analysis for Genomics, Euler Path for Genome Assembly.
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
Beginig of the expansion of DBGWAS to a metagenomic scale.
Benchmarks and evaluation scripts for the Fulgor index.
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
A fast whole-genome aligner based on de Bruijn graphs
A fast constructor of the compressed de Bruijn graph from many genomes
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Sparse Binary Relation Representations for Genome Graph Annotation
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Souce code for my MSc Thesis in Computer Science “Nested Marvellous Sequences”
What I learned from Data Structures and Algorithms Specialization on Coursera.
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