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mkdocs.yml
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# vim: set ts=2 sw=2 sts=2 expandtab:
# yaml-language-server: $schema=https://squidfunk.github.io/mkdocs-material/schema.json
# Site information
site_name: Sherlock
site_description: User documentation for Sherlock, Stanford's HPC cluster.
site_author: Kilian Cavalotti
site_url: https://www.sherlock.stanford.edu/
# Repository
repo_name: SRCC // Open Source
repo_url: https://github.com/stanford-rc
edit_uri: www.sherlock.stanford.edu/edit/main/src/
# Copyright
copyright: >-
Copyright © 2014 - 2024 —
<a href='mailto:srcc-support@stanford.edu'>Stanford Research Computing</a><br/>
# Configuration
docs_dir: src
site_dir: site
# Validation
validation:
omitted_files: warn
absolute_links: relative_to_docs
unrecognized_links: warn
anchors: warn
nav:
omitted_files: info
# Theme options
theme:
name: material
custom_dir: overrides
# 404 page
static_templates:
- 404.html
# Don't include MkDocs' JavaScript
include_search_page: false
search_index_only: true
language: en
features:
- announce.dismiss
- content.code.annotate
- navigation.indexes
#- navigation.instant # instant loading doesn't work well with our landing page
- navigation.sections
- navigation.tabs
- navigation.tabs.sticky
- navigation.top
- navigation.tracking
- search.highlight
- search.share
- search.suggest
font:
text: Roboto
code: Roboto Mono
favicon: assets/images/logo_small.png
logo: assets/images/logo_small.png
logo_hero: assets/images/logo.png
banner: assets/images/banner.png
icon:
repo: fontawesome/brands/github
admonition:
note: octicons/note-16
abstract: octicons/checklist-16
info: octicons/info-16
tip: octicons/light-bulb-16
success: octicons/check-16
question: octicons/question-16
warning: octicons/alert-16
failure: octicons/x-circle-16
danger: octicons/zap-16
bug: octicons/bug-16
example: octicons/beaker-16
quote: octicons/quote-16
# custom
sherlock: srcc/mono/sherlock
# Customization
extra_css:
- /assets/stylesheets/sh.css
extra:
analytics:
provider: google
property: !!python/object/apply:os.getenv ["GOOGLE_ANALYTICS_KEY"]
feedback:
title: Was this page helpful?
ratings:
- icon: material/emoticon-happy-outline
name: This page was helpful
data: 1
note: >-
Thanks for your feedback!
- icon: material/emoticon-sad-outline
name: This page could be improved
data: 0
note: >-
Thanks for your feedback! Help us improve this page by
using our <a href="https://github.com/stanford-rc/www.sherlock.stanford.edu/issues/new/?title=[Feedback]+{title}+-+{url}&labels=feedback"
target=_blank>feedback form</a>.
consent:
title: Cookie consent
description: >
We use cookies to recognize your repeated visits and preferences, as well
as to measure the effectiveness of our documentation and whether users
find what they're searching for. With your consent, you're helping us to
make our documentation better.
generator: false
social:
- icon: fontawesome/solid/earth-americas
link: https://srcc.stanford.edu
name: SRCC website
- icon: fontawesome/brands/github
link: https://github.com/stanford-rc
name: SRCC on GitHub
- icon: fontawesome/brands/slack
link: https://srcc.slack.com/
name: SRCC Users Slack workspace
# custom
made_in: >-
<a href='https://www.google.com/maps/place/Stanford,+CA'>Stanford, California</a>
support_email: srcc-support@stanford.edu
purge_days: 90
# Plugins
plugins:
- search:
separator: "[\\s\\-,:!=\\[\\]()\"/]+|\\.(?!\\d)|&[lg]t;|(?!\\b)(?=[A-Z][a-z])"
- social:
cards_layout: default
cards_layout_options:
#logo: src/assets/images/logo_small.png
font_family: Roboto
background_image: src/assets/images/logo.png
background_color: "#8C1515"
- minify:
minify_html: true
minify_js: true
- macros:
on_error_fail: true
include_yaml:
- includes/data/software.yml
- includes/data/facts.yml
- redirects:
redirect_maps:
# external URLs
ondemand.md: https://login.sherlock.stanford.edu/
shell.md: https://login.sherlock.stanford.edu/pun/sys/shell/ssh
catalog.md: https://docs.google.com/presentation/d/e/2PACX-1vSJmG4oG36AZTpyHS9Hbynvk8lUwdVRMxNcleUlPY9xwYoCrdWVgTkifHgf6zl_rgndOVzRZt0-qgi0/pub
order.md: https://docs.google.com/forms/d/e/1FAIpQLSd95TJaPbStWEZAUYHXNQedp9lQJMsTjyISjKmRMSpmL0rVqg/viewform
# nav refactor, legacy URLs
docs/overview/index.md: docs/index.md
docs/overview/introduction.md: docs/index.md
docs/overview/concepts.md: docs/concepts.md
docs/overview/orders.md: docs/orders.md
docs/overview/orders/process.md: docs/orders.md
docs/overview/tech/index.md: docs/tech/index.md
docs/overview/tech/specs.md: docs/tech/index.md
docs/overview/tech/facts.md: docs/tech/facts.md
docs/overview/tech/status.md: docs/tech/status.md
docs/overview/tech/glossary.md: docs/glossary.md
docs/overview/about.md: docs/credits.md
docs/getting-started/prerequisites.md: docs/getting-started/index.md
docs/storage/overview.md: docs/storage/index.md
docs/software/overview.md: docs/software/index.md
- tags
# Extensions
markdown_extensions:
- abbr
- admonition
- attr_list
- def_list
- footnotes
- meta
- md_in_html
- toc:
permalink: "#"
toc_depth: 4
- pymdownx.arithmatex:
generic: true
- pymdownx.betterem:
smart_enable: all
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:material.extensions.emoji.twemoji
emoji_generator: !!python/name:material.extensions.emoji.to_svg
options:
custom_icons:
- overrides/.icons
- pymdownx.highlight
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink:
repo_url_shortener: true
provider: github
user: stanford-rc
repo: sherlock
- pymdownx.caret
- pymdownx.tilde
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.snippets:
check_paths: true
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:pymdownx.superfences.fence_code_format
- pymdownx.tabbed:
alternate_style: true
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.escapeall:
hardbreak: true
nbsp: true
#
# Page tree
#
nav:
- Home:
- docs/index.md
- Concepts: docs/concepts.md
- Glossary: docs/glossary.md
- Ordering nodes: docs/orders.md
- Tech specs:
- docs/tech/index.md
- Facts: docs/tech/facts.md
- Status: docs/tech/status.md
- Credits: docs/credits.md
- Getting Started:
- docs/getting-started/index.md
- Connecting: docs/getting-started/connecting.md
- Submitting jobs: docs/getting-started/submitting.md
- User guide:
- Running jobs: docs/user-guide/running-jobs.md
- OnDemand: docs/user-guide/ondemand.md
- Specialized resources:
- GPU nodes: docs/user-guide/gpu.md
- Troubleshooting: docs/user-guide/troubleshoot.md
- Storage:
- docs/storage/index.md
- Filesystems: docs/storage/filesystems.md
- Data sharing: docs/storage/data-sharing.md
- Data protection: docs/storage/data-protection.md
- Data transfer: docs/storage/data-transfer.md
- Software:
- docs/software/index.md
- Modules: docs/software/modules.md
- List: docs/software/list.md
- Installation: docs/software/install.md
- Containers:
- docs/software/containers/index.md
- Singularity: docs/software/containers/singularity.md
- Tools:
- ClusterShell: docs/software/using/clustershell.md
- Usage:
- R: docs/software/using/R.md
- Julia: docs/software/using/julia.md
- Python: docs/software/using/python.md
- Anaconda: docs/software/using/anaconda.md
- Perl: docs/software/using/perl.md
- Matlab: docs/software/using/matlab.md
- Rclone: docs/software/using/rclone.md
- Spark: docs/software/using/spark.md
- MariaDB: docs/software/using/mariadb.md
- PostgreSQL: docs/software/using/postgresql.md
- Schrödinger: docs/software/using/schrodinger.md
- Quantum Espresso: docs/software/using/quantum-espresso.md
- Advanced topics:
- Connection options: docs/advanced-topics/connection.md
- Job management: docs/advanced-topics/job-management.md
- Node features: docs/advanced-topics/node-features.md