diff --git a/workflow/rules/datavzrd.smk b/workflow/rules/datavzrd.smk index b121d971e..5ee43e7be 100644 --- a/workflow/rules/datavzrd.smk +++ b/workflow/rules/datavzrd.smk @@ -81,8 +81,8 @@ rule datavzrd_variants_calls: "../resources/datavzrd/data_observations.js" ), config="resources/datavzrd/{batch}.{event}.datavzrd.yaml", - gene_oncoprint="results/tables/oncoprints/{batch}.{event}/gene-oncoprint.tsv", - variant_oncoprints="results/tables/oncoprints/{batch}.{event}/variant-oncoprints", + gene_oncoprint=get_oncoprint("gene"), + variant_oncoprints=get_oncoprint("variant"), output: report( directory("results/datavzrd-report/{batch}.{event}.fdr-controlled"),