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Hi, thanks for your program, it's very useful but a small change that would make it more so would be to make the output file easily machine readable (e.g. directly importable into R or python). Right now the comments and headers are interspersed but there's really no need for that. You also have a "Category" column with non-distinct numbers (e.g. "Phage Category 1" and "Prophage Category 1" get the same entry). You also mangle the FASTA headers from the original file (e.g. replacing '.' with '_') which makes it unnecessarily more difficult to match up to the original data files. thanks
The text was updated successfully, but these errors were encountered:
Thanks for the suggestion, and thanks a lot for sharing the R Code to import VirSorter results. Unfortunately, there is no support for VirSorter development anymore, so I can't commit on any timeframe by which these different issues may be fixed, but I have linked the R code in the Readme to help any user which would like to do the same type of import.
Hi, thanks for your program, it's very useful but a small change that would make it more so would be to make the output file easily machine readable (e.g. directly importable into R or python). Right now the comments and headers are interspersed but there's really no need for that. You also have a "Category" column with non-distinct numbers (e.g. "Phage Category 1" and "Prophage Category 1" get the same entry). You also mangle the FASTA headers from the original file (e.g. replacing '.' with '_') which makes it unnecessarily more difficult to match up to the original data files. thanks
The text was updated successfully, but these errors were encountered: