Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

v2.0rc - 2024 #52

Merged
merged 107 commits into from
Jun 26, 2024
Merged

v2.0rc - 2024 #52

merged 107 commits into from
Jun 26, 2024

Conversation

sigven
Copy link
Owner

@sigven sigven commented Apr 29, 2024

  • Changes to support new structure of reference data
  • New HTML template based on quarto

pdiakumis and others added 30 commits July 22, 2023 21:43
@pdiakumis
GHA: use multi-version R condabuild
89b815e
@pdiakumis
conda: remove pcgrr as dependency to avoid cyclic dependency hell
bda1174
@pdiakumis
conda: include assertable; remove pcgrr from DESCRIPTION
407b149
@pdiakumis
Bump version: 1.0.1 → 1.0.2
e300ef2
@pdiakumis
refactor gha
cedd024
@pdiakumis
yaml -> yml
1dd3cd9
@pdiakumis
Bump version: 1.0.2 → 1.0.3
25dacd5
@pdiakumis
pkgdown: specify conda channels
4c93e85
@pdiakumis
crancheck
250b051
@pdiakumis
gha: cleanup
2104465
@pdiakumis
Bump version: 1.0.3 → 1.0.1
b27af58
@pdiakumis
mv examples -> inst/examples; satisfy crancheck
84d79b1
@sigven
fixes for updated pcgr pre-report pipeline
fb9156a
@sigven
quarto dev
dfcc3de
@sigven
resolved conflicts
d9df37d
@sigven
Merge branch 'umccr-update_conda_r' into bundle_update_2023
f903aba
@pdiakumis
bumpversion: use dev part
e02019e
@pdiakumis
Bump version: 1.0.1 → 1.0.1.9000
b13bd97
@pdiakumis
add pcgrr to DESCRIPTION
b73f1b7
@pdiakumis
Bump version: 1.0.1.9000 → 1.0.1.9001
b6568e2
@pdiakumis
conda: cleanup dependencies
f2d6a37
@pdiakumis
Bump version: 1.0.1.9001 → 1.0.1.9002
44e8189
@pdiakumis
stick to R v4.2 for now
3faf189
@pdiakumis
Bump version: 1.0.1.9002 → 1.0.1.9003
87a12a1
@sigven
fix gnomAD tag
f94a656
@sigven
Merge branch 'bundle_update_2023' of github.com:sigven/cpsr into bund…
04c2cd8 
…le_update_2023
@sigven
fix gnomad col and classify all logic
0fea684
@sigven
classification update
db35955
@sigven
fix quarto processing - HTML output
56863e8
@sigven
use openxlsx2
7cc57f6
pdiakumis and others added 26 commits June 14, 2024 14:12
@pdiakumis @sigven
mkdir -> fs::dir_create
f5e500e
@pdiakumis @sigven
style R/utils.R
f646537
@pdiakumis @sigven
use fs instead of system calls throughout
9355b7d
@pdiakumis @sigven
style R/main.R
6826abd
@pdiakumis @sigven
use local favicon-16x16.png (no need to access https)
b141eac
@pdiakumis
Bump version: 1.0.1.9010 → 1.0.1.9011
38010ba
@pdiakumis
quarto render: tmp -> tmp/templates
5fe1add
@pdiakumis
Bump version: 1.0.1.9011 → 1.0.1.9012
a321108
@sigven
fix access right for dir_create
d124380
@sigven
Bump version: 1.0.1.9012 → 1.0.1.9013
8c7ac14
@pdiakumis
remove fs dep, move to base calls instead
4f8bbc4
@pdiakumis
Bump version: 1.0.1.9013 → 1.0.1.9014
d787724
@sigven
docs update
8cedc78
@pdiakumis
remove top quarto tmp folder
5edbbad
@pdiakumis
GHA: pkgdown deploy only on master
70d10bd
@pdiakumis
Bump version: 1.0.1.9014 → 1.0.1.9015
2fafa4b
@sigven
minor doc fixes
a730c9f
@sigven
Merge branch 'bundle_update_2023' of github.com:sigven/cpsr into bund…
50bf185 
…le_update_2023
@sigven
docs update
2048790
@sigven
remove DESCRIPTION date
825181a
@sigven
Bump version: 1.0.1.9015 → 1.0.1.9016
5801a26
@sigven
polish docs for release
e5a00ea
@pdiakumis @sigven
update LICENSE date
4ae3135
@pdiakumis @sigven
vignettes/running.Rmd: fix whitespace
31b856e
@pdiakumis @sigven
README: fix CHANGELOG link
3bd49f5
@pdiakumis @sigven
vignettes: fix typos
1ca778f
@sigven sigven closed this Jun 26, 2024
@sigven sigven reopened this Jun 26, 2024
@sigven sigven merged commit a48307b into master Jun 26, 2024
2 checks passed
@sigven sigven deleted the bundle_update_2023 branch July 7, 2024 21:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@sigven @pdiakumis