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Code hardening #109

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18 tasks
AlexVCaron opened this issue Mar 21, 2024 · 0 comments
Open
18 tasks

Code hardening #109

AlexVCaron opened this issue Mar 21, 2024 · 0 comments
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enhancement New feature or request
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@AlexVCaron
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AlexVCaron commented Mar 21, 2024

We arrived to the first code freeze of nf-scil. Congrats all, for the superstar work 🥳 !

Next tasks are going to be :

  • Cleanup metadata files for modules :
    • Ensure inputs and outputs are in the correct order
    • Ensure inputs and outputs descriptions are clear enough
    • Ensure inputs and outputs types are valid
    • Validate the tools section contains all tools used by the module
    • Validate the keywords : at least 3, the most relevant possible
    • Validate the description, add a link to the official description of scripts used
  • Uniformize the modules :
    • Validate tool categories (only names, no verbs)
    • Validate inputs have relevant names
    • Validate task.ext parameters have relevant names
    • Optimize writing
      • ternary short form
      • groovy trueness
      • groovy functions
      • readable bash
      • ...
  • Harden tests :
    • Validate names are relevant
    • Validate test data are relevant
    • Port test data from repo and scilpy to nf-archives
    • Port tests to nf-test
@AlexVCaron AlexVCaron added this to the nf-scil v1.0 milestone Mar 21, 2024
@AlexVCaron AlexVCaron added the enhancement New feature or request label Apr 3, 2024
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