{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":704084682,"defaultBranch":"main","name":"GenomeDelta","ownerLogin":"rpianezza","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-10-12T13:59:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/113103590?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1697119389.0","currentOid":""},"activityList":{"items":[{"before":"c9818edb4e4f1005f38d1877b8d2e86d2920ac45","after":"5dbc501e0446388dcfc65704b9ffb4ec6c224187","ref":"refs/heads/main","pushedAt":"2024-09-05T11:25:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"57268e2bb2a1c3d45b63bdd610cfd2c07a56cd95","after":"c9818edb4e4f1005f38d1877b8d2e86d2920ac45","ref":"refs/heads/main","pushedAt":"2024-09-05T11:23:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"6ff54a350821d3892a7308485c160d32c72ff148","after":"57268e2bb2a1c3d45b63bdd610cfd2c07a56cd95","ref":"refs/heads/main","pushedAt":"2024-09-04T09:41:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a5fbd5b175685256fc6bd32c61580fb0cb76a215","after":"6ff54a350821d3892a7308485c160d32c72ff148","ref":"refs/heads/main","pushedAt":"2024-08-13T08:53:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"df8544cdb9a0aee9c53e5f1dca9df9a07cbc805a","after":"a5fbd5b175685256fc6bd32c61580fb0cb76a215","ref":"refs/heads/main","pushedAt":"2024-08-13T08:48:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"05181174c600f53e1fb9501d2ce7e54dd48d867c","after":"df8544cdb9a0aee9c53e5f1dca9df9a07cbc805a","ref":"refs/heads/main","pushedAt":"2024-08-08T15:25:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"4cada59f4d55990a9e81d1825f18b6312d6785e3","after":"05181174c600f53e1fb9501d2ce7e54dd48d867c","ref":"refs/heads/main","pushedAt":"2024-06-14T08:52:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Add LICENSE","shortMessageHtmlLink":"Add LICENSE"}},{"before":"710aef1e058845197d420294f38c7a82a30fba97","after":"4cada59f4d55990a9e81d1825f18b6312d6785e3","ref":"refs/heads/main","pushedAt":"2024-05-31T07:49:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"da8e732e473be60144b72651436f277c618af8aa","after":"710aef1e058845197d420294f38c7a82a30fba97","ref":"refs/heads/main","pushedAt":"2024-05-31T07:43:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Linux version uploaded","shortMessageHtmlLink":"Linux version uploaded"}},{"before":"83ec18bd48b5668893fd59b81731472ddb025b80","after":"da8e732e473be60144b72651436f277c618af8aa","ref":"refs/heads/main","pushedAt":"2024-05-29T09:19:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update set-env-linux.yml","shortMessageHtmlLink":"Update set-env-linux.yml"}},{"before":"6c0a40c3e58515396ada5696d4f4957566c1641b","after":"83ec18bd48b5668893fd59b81731472ddb025b80","ref":"refs/heads/main","pushedAt":"2024-05-29T09:04:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Linux","shortMessageHtmlLink":"Linux"}},{"before":"ce364de45e15621c795f5d4362be9ce064873914","after":"6c0a40c3e58515396ada5696d4f4957566c1641b","ref":"refs/heads/main","pushedAt":"2024-03-13T12:01:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Walkthrough\n\nAdded WT md and files (fq and fa)","shortMessageHtmlLink":"Walkthrough"}},{"before":"255f5e15484cff19098e664d28bf850f6dd39637","after":"ce364de45e15621c795f5d4362be9ce064873914","ref":"refs/heads/main","pushedAt":"2024-03-13T09:15:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update manual\n\nUpdated manual adding the --prefix argument. Updated Benchmarking md","shortMessageHtmlLink":"Update manual"}},{"before":"135c5422c923c06d2a189cb9475f33d8c88bbbba","after":"255f5e15484cff19098e664d28bf850f6dd39637","ref":"refs/heads/main","pushedAt":"2024-03-12T14:49:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Benchmark + validation\n\nAdded folder with validation and benchmarking scripts","shortMessageHtmlLink":"Benchmark + validation"}},{"before":"814eada5cd7ea4df6a143b007feb0882472cb30a","after":"135c5422c923c06d2a189cb9475f33d8c88bbbba","ref":"refs/heads/main","pushedAt":"2024-03-11T14:29:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Debug\n\nFixed a bug in consensus generations that was giving problems when \"_\" where in the chr name","shortMessageHtmlLink":"Debug"}},{"before":"c09dadc7b87261c4985b4375fc708c161f22f409","after":"814eada5cd7ea4df6a143b007feb0882472cb30a","ref":"refs/heads/main","pushedAt":"2024-03-05T12:34:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Fixed sorting problem\n\nfai file extracted directly from BAM to avoid inconsistencies","shortMessageHtmlLink":"Fixed sorting problem"}},{"before":"6a400a051e1ef5ef2e274ded8d8dc2614e4b3151","after":"c09dadc7b87261c4985b4375fc708c161f22f409","ref":"refs/heads/main","pushedAt":"2024-03-04T15:13:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Fixed sorting\n\nfixed a problem that was causing disk space error (bedtools coverage for credibility is now sorted)","shortMessageHtmlLink":"Fixed sorting"}},{"before":"7bebdf2ba07bcc2862548a07182e2512c2ad9146","after":"6a400a051e1ef5ef2e274ded8d8dc2614e4b3151","ref":"refs/heads/main","pushedAt":"2024-02-27T14:16:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Changed coverage bias calculation\n\nFrom 0 to infinite to -1 -> +1\nChanged also visualization\nAdded \"prefix\" as optional argument to give a unique name to the output files","shortMessageHtmlLink":"Changed coverage bias calculation"}},{"before":"99f28b05e843f9ed3ebf1a09129dbb259f369fc2","after":"7bebdf2ba07bcc2862548a07182e2512c2ad9146","ref":"refs/heads/main","pushedAt":"2024-02-12T08:28:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update Manual","shortMessageHtmlLink":"Update Manual"}},{"before":"39c78611358c8733a6389bf681fb37f98abddfb6","after":"99f28b05e843f9ed3ebf1a09129dbb259f369fc2","ref":"refs/heads/main","pushedAt":"2024-02-08T10:00:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"debug\n\nfixed a problem regarding credibility scores that was emerging with some genomes","shortMessageHtmlLink":"debug"}},{"before":"b9256f3ec0bf4ad2e154b177e86ee3004f2a6d62","after":"39c78611358c8733a6389bf681fb37f98abddfb6","ref":"refs/heads/main","pushedAt":"2023-12-04T10:04:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Added --refine option\n\nTo merge coupled clusters","shortMessageHtmlLink":"Added --refine option"}},{"before":"eb13daa07399bf65ae2db12bbe3bb754c058a82f","after":"b9256f3ec0bf4ad2e154b177e86ee3004f2a6d62","ref":"refs/heads/main","pushedAt":"2023-12-01T09:00:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update MSA2consensus\n\nNow the cluster credibility is the median and not the mean","shortMessageHtmlLink":"Update MSA2consensus"}},{"before":"f8d343de0da7bc87da7b9eb324008517ec77caf8","after":"eb13daa07399bf65ae2db12bbe3bb754c058a82f","ref":"refs/heads/main","pushedAt":"2023-11-28T16:08:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a9738213b10dad5ba0c429212bb58b33e7817693","after":"f8d343de0da7bc87da7b9eb324008517ec77caf8","ref":"refs/heads/main","pushedAt":"2023-11-28T16:06:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Added README","shortMessageHtmlLink":"Added README"}},{"before":"97f522024e9ed31f64d97acfa374a267374e9f08","after":"a9738213b10dad5ba0c429212bb58b33e7817693","ref":"refs/heads/main","pushedAt":"2023-11-28T14:41:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update launcher.py","shortMessageHtmlLink":"Update launcher.py"}},{"before":"8281e26c0f41e6d6cb0cedb18691c12e121e87dd","after":"97f522024e9ed31f64d97acfa374a267374e9f08","ref":"refs/heads/main","pushedAt":"2023-11-28T14:31:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update setup.sh","shortMessageHtmlLink":"Update setup.sh"}},{"before":"bf53a6be475cd83e51c2a1fd3635c3d74cafbf1d","after":"8281e26c0f41e6d6cb0cedb18691c12e121e87dd","ref":"refs/heads/main","pushedAt":"2023-11-28T14:16:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update launcher and setup","shortMessageHtmlLink":"Update launcher and setup"}},{"before":"e142b430f3dfc1b8deba8d71effe86fc3823753a","after":"bf53a6be475cd83e51c2a1fd3635c3d74cafbf1d","ref":"refs/heads/main","pushedAt":"2023-11-28T13:14:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Modified launcher","shortMessageHtmlLink":"Modified launcher"}},{"before":"bac1c04e469b7bfce10253bac65fe0374c4d06f7","after":"e142b430f3dfc1b8deba8d71effe86fc3823753a","ref":"refs/heads/main","pushedAt":"2023-11-28T12:19:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update visualization.R","shortMessageHtmlLink":"Update visualization.R"}},{"before":"ebfda5679fdd4ebc2d00fb09417f644c51669ccc","after":"bac1c04e469b7bfce10253bac65fe0374c4d06f7","ref":"refs/heads/main","pushedAt":"2023-11-28T11:36:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpianezza","name":"Riccardo Pianezza","path":"/rpianezza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/113103590?s=80&v=4"},"commit":{"message":"Update set-env.yml","shortMessageHtmlLink":"Update set-env.yml"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQxMToyNToyNy4wMDAwMDBazwAAAAStwJ0p","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQxMToyNToyNy4wMDAwMDBazwAAAAStwJ0p","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0yOFQxMTozNjowOC4wMDAwMDBazwAAAAO5vHKE"}},"title":"Activity ยท rpianezza/GenomeDelta"}