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pbmc_10k_v3 example data set in Cerebro v1.0.0

Load data

Cerebro v1.0.0: Load data

t-SNE projection with cells colored by sample

Cerebro v1.0.0: t-SNE projection with cells colored by sample

t-SNE projection with cells colored by cell cycle

Cerebro v1.0.0: t-SNE projection with cells colored by cell cycle

Composition of samples by cluster

Cerebro v1.0.0: Composition of samples by cluster

Distribution of cell cycle states by sample

Cerebro v1.0.0: Distribution of cell cycle states by sample

Cluster tree

Cerebro v1.0.0: Cluster tree

Composition of clusters by sample

Cerebro v1.0.0: Composition of clusters by sample

Table of most expressed by sample and cluster

Cerebro v1.0.0: Table of most expressed by sample and cluster

Table of marker genes by sample and cluster

Cerebro v1.0.0: Table of marker genes by sample and cluster

Table of enriched pathways in marker genes of samples and clusters

Cerebro v1.0.0: Table of enriched pathways in marker genes of samples and clusters

Expression of individual genes in t-SNE projection

Cerebro v1.0.0: Expression of individual genes in t-SNE projection

Expression of individual genes by sample and cluster

Cerebro v1.0.0: Expression of individual genes by sample and cluster

Expression of MSigDB gene sets in t-SNE projection

Cerebro v1.0.0: Expression of MSigDB gene sets in t-SNE projection

Expression of MSigDB gene sets by sample and cluster and average expression of 50 most expressed genes in gene set

Cerebro v1.0.0: Expression of MSigDB gene sets by sample and cluster and average expression of 50 most expressed genes in gene set

Information about analysis

Cerebro v1.0.0: Information about analysis

About Cerebro

Cerebro v1.0.0: About Cerebro