Skip to content

Latest commit

 

History

History
34 lines (29 loc) · 1.17 KB

NEWS.md

File metadata and controls

34 lines (29 loc) · 1.17 KB

rCNV 1.3.0 (third update)

  • parallelization enabled
  • dupValidate function revised
  • per site Fis added to deviant detection
  • vstPermutation function added
  • maf modified to remove multi-allelic sites
  • FIT correction added

rCNV 1.2.0 (second update)

  • relatedness function optimized
  • bugs fixed in cpm.normal function
  • bugs fixed in the sig.het function
  • new publication added
  • web page updated

rCNV 1.1.0 (first update)

Changes

  • sig.het function is 10x faster
  • dupGet function categorizes SNPs into deviants and non-deviants not duplicates and singlets
  • The new function cnv categorizes deviant SNPs to CNVs using the given statistical approaches or using unsupervised clustering
  • minor issues of chi-square and Z-score calculations are fixed
  • allele.info calculates excess of heterozygotes in addition to Z-score and chi-square values
  • sig.hets function also accepts allele depth table for input
  • new function added 'power.bias' to plot detection bias from simulations
  • webpage updated to match the changes

rCNV 1.0.0 (Release date: 29/03/2022)

Changes

  • All the major functions completed
  • bugs fixed
  • Website updated
  • this is the first release of the package