From 93f8b0ac523c8adfd66874fe044f94db512b6248 Mon Sep 17 00:00:00 2001 From: Kyla Cochrane Date: Thu, 22 Feb 2024 14:28:38 -0500 Subject: [PATCH 1/3] Pinned nf-validation and nf-iridanext to specific versions in the nextflow.config file --- CHANGELOG.md | 6 ++++++ nextflow.config | 6 +++--- 2 files changed, 9 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 52eb926..84d52ec 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,3 +8,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added - Initial release of fetchdatairidanext pipeline which will download reads from NCBI/INSDC archives. + +## [1.0.1] - 2024-02-22 + +### Changed + +- Pinned nf-validation (@1.1.3) and nf-iridanext (@0.2.0) plugins to specific versions in nextflow.config diff --git a/nextflow.config b/nextflow.config index 0ad21a7..429d5d1 100644 --- a/nextflow.config +++ b/nextflow.config @@ -155,8 +155,8 @@ singularity.registry = 'quay.io' // Nextflow plugins plugins { - id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet - id 'nf-iridanext' + id 'nf-validation@1.1.3' // Validation of pipeline parameters and creation of an input channel from a sample sheet + id 'nf-iridanext@0.2.0' } // Export these variables to prevent local Python/R libraries from conflicting with those in the container @@ -198,7 +198,7 @@ manifest { description = """IRIDA Next pipeline for fetching data from NCBI""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.0.0' + version = '1.0.1' doi = '' defaultBranch = 'main' } From fd964e9554f366ea07e25bfccebdd0fa1fc601c2 Mon Sep 17 00:00:00 2001 From: Kyla Cochrane Date: Thu, 22 Feb 2024 15:39:00 -0500 Subject: [PATCH 2/3] Update CHANGELOG.md Added the newest version to the top of the CHANGELOG --- CHANGELOG.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 23150d1..a48c174 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,14 +5,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [1.0.1] - 2024-02-22 + +### Changed + +- Pinned nf-validation (@1.1.3) and nf-iridanext (@0.2.0) plugins to specific versions in nextflow.config + ## [1.0.0] - 2024-01-26 ### Added - Initial release of fetchdatairidanext pipeline which will download reads from NCBI/INSDC archives. -## [1.0.1] - 2024-02-22 -### Changed - -- Pinned nf-validation (@1.1.3) and nf-iridanext (@0.2.0) plugins to specific versions in nextflow.config From 7740f34906ad7e3f0e23692c48abd71676ead3d0 Mon Sep 17 00:00:00 2001 From: Kyla Cochrane Date: Thu, 22 Feb 2024 16:30:00 -0500 Subject: [PATCH 3/3] Updated formatting on CHANGELOG.md with Prettier --- CHANGELOG.md | 2 -- 1 file changed, 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a48c174..804cc18 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -16,5 +16,3 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added - Initial release of fetchdatairidanext pipeline which will download reads from NCBI/INSDC archives. - -