Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add nf-prov #2455

Open
wants to merge 7 commits into
base: dev
Choose a base branch
from
Open

Add nf-prov #2455

Changes from 1 commit
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
febbdf0
Add nf-prov
maxulysse Sep 29, 2023
65c452b
Update nf_core/pipeline-template/nextflow.config
maxulysse Sep 29, 2023
66231fd
Update nf_core/pipeline-template/nextflow.config
maxulysse Sep 29, 2023
41b723a
Apply suggestions from code review
maxulysse Oct 31, 2023
1fa4aed
Merge branch 'dev' into nf-prov
maxulysse Oct 31, 2023
aaf689e
Merge branch 'dev' into nf-prov
maxulysse Nov 23, 2023
79f3c58
Merge branch 'dev' into nf-prov
maxulysse Dec 19, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions nf_core/pipeline-template/nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -191,6 +191,7 @@ singularity.registry = 'quay.io'
// Nextflow plugins
plugins {
id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet
id 'nf-prov' // Provenance reports for pipeline runs
}

{% if igenomes -%}
Expand Down Expand Up @@ -233,6 +234,10 @@ dag {
enabled = true
file = "${params.outdir}/pipeline_info/pipeline_dag_${trace_timestamp}.html"
}
prov {
enabled = true
file = "${params.outdir}/pipeline_info/manifest_${trace_timestamp}.json"
maxulysse marked this conversation as resolved.
Show resolved Hide resolved
}

manifest {
name = '{{ name }}'
Expand Down
Loading